View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_low_16 (Length: 243)
Name: NF14563_low_16
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 14277561 - 14277324
Alignment:
| Q |
6 |
aaaatggtttcggttgagaggataaaacagtttactaacctcccatctgaagctccatggaaaattgttgacaagtctcttccacataattggcctagtc |
105 |
Q |
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| T |
14277561 |
aaaatggtttcggttgagaggataaaacagtttactaacctcccatctgaagctccatggaaaattgctgacaagtctcttccacataattggcctagtc |
14277462 |
T |
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| Q |
106 |
atggcactatagagttaaataatttacaggtatatactatttgcaagatagtcaatttaatatgtggtgagaaatgagaacctgcataagtaaaccaaaa |
205 |
Q |
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| T |
14277461 |
atggcactatagagttaaataatttacaggtatatactatttgcaagatagtcaatttaatatgtggtgagaaatgagaacctgcataagtaaaccaaaa |
14277362 |
T |
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| Q |
206 |
ttagtgtataccatttgggaaaagaagcatgcgttagt |
243 |
Q |
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| T |
14277361 |
ttagtgtataccatttgggaaaagaagcatgcgttagt |
14277324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 14299128 - 14298899
Alignment:
| Q |
6 |
aaaatggtttcggttgagaggataaaacagtttactaacctcccatctgaagctccatggaaaattgttgacaagtctcttccacataattggcctagtc |
105 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||| || ||||||||||||| |
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| T |
14299128 |
aaaatggtttcagttgagaggataaaacagtttactaacctctcatcagaagctccatggaaaattgctgacaagtctcctcctcagaattggcctagtc |
14299029 |
T |
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| Q |
106 |
atggcactatagagttaaataatttacaggtatatactatttgcaaga-tagtcaatttaatatgtggtgagaaatgagaacctgcataagtaaaccaaa |
204 |
Q |
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| T |
14299028 |
atggcactatagagttacataatttacaggtatatactatttgcaagattagtcaatttaatatgtggtgagaacagag-acctgcataaatcaaccaaa |
14298930 |
T |
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| Q |
205 |
attagtgtataccatttgggaaaagaagcat |
235 |
Q |
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| T |
14298929 |
attagtgtataccatttgggaaaagaagcat |
14298899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 14315837 - 14315609
Alignment:
| Q |
6 |
aaaatggtttcggttgagaggataaaacagtttactaacctcccatctgaagctccatggaaaattgttgacaagtctcttccacataattggcctagtc |
105 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| || | ||||||||||||| |
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| T |
14315837 |
aaaatggtttctgttgagaggataaaacagtttactaaccttccatcagaagctccatggaaaattgctgataagtctcctc---agaattggcctagtc |
14315741 |
T |
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| Q |
106 |
atggcactatagagttaaataatttacaggtatatactatttgcaagat-agtcaatttaatatgtggtgagaaatgagaacctgcataagtaaaccaaa |
204 |
Q |
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| T |
14315740 |
acggaactatagagttacataatttagaggtatatactatttgcaagattagtcaatttaatatgtggtgagaactgagaacctgcataaataaaccgaa |
14315641 |
T |
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| Q |
205 |
attagtgtataccatttgggaaaagaagcatg |
236 |
Q |
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| T |
14315640 |
attagtgtataccatttgggaaaagaagcatg |
14315609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 25881200 - 25881067
Alignment:
| Q |
6 |
aaaatggtttcggttgagaggataaaacagtttactaacctcccatctgaagctccatggaaaattgttgacaagtctcttccacataattggcctagtc |
105 |
Q |
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||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||| |||||||||| ||||||||||| ||| || ||||||||||||| |
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| T |
25881200 |
aaaatggtttcagttgaaaggataaaacagtttacaaatctcccatcagaagctccttggaaaattgctgacaagtctcctcctcaaaattggcctagtc |
25881101 |
T |
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| Q |
106 |
atggcactatagagttaaataatttacaggtata |
139 |
Q |
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| T |
25881100 |
atggcactatagagttaaacaacttacaggtata |
25881067 |
T |
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