View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_low_2 (Length: 634)
Name: NF14563_low_2
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 15697321 - 15696871
Alignment:
| Q |
1 |
agaccaatcttttttgaaagacttttaaccaattttgttacagtt-cttttaattaaaatcaatttgacctgcaaaatcaaacatatat--tcaaggacg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| |||||||||||||||||| | |||||| |
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| T |
15697321 |
agaccaatcttttttgaaagacttttaaccaattttgttaaagttacttttaactaaaatcaatatgacccgcaaaatcaaacatatatctttaaggaca |
15697222 |
T |
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| Q |
98 |
cttcgcgcttgttaaaagtcaaactttcaatgtggtgacgtctacatttcttcaaagatattagcggatcttaaagtttaagatgtgtctttttagcatc |
197 |
Q |
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| T |
15697221 |
cttcacgcttgttaaga------cttccaatgtagtgacgtctacatttcttcaaaggtattagcggaccttaaagtttaagatgtgtctttttagcatc |
15697128 |
T |
|
| Q |
198 |
ttgca-tagcaaatcagatagtttgttgcatcaatgaatctagaatgttaatttacaatccaacagctacgaatgcatattacagatctaaaccatttca |
296 |
Q |
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||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15697127 |
ttgcaatagcaaatcacatagtttgttgcaagaatgaatctagaatgtcaatttacaatccaacagctacgaatgcataatacagatctaaaccatttca |
15697028 |
T |
|
| Q |
297 |
cacaacgtgtgatttcgaccatacaatcaaaattgatggtcaaaatcaactattaattgtataagtgaaatagttcgaatatccaacttaactaacattt |
396 |
Q |
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| T |
15697027 |
cacaatgt-tgatttcgacccttcaattaaaattgatggtcaaaatcaattatt-attgtataaatgcaatagtttgaatatccaacttaactaacatcc |
15696930 |
T |
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| Q |
397 |
tagtttaaagatgttatctgattcgagagattaatcgtatttatggtgtctttttatct |
455 |
Q |
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| T |
15696929 |
taatttaaagatgttatctgactcgagagattaaccgtatccacgatgtctttttatct |
15696871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 458 - 617
Target Start/End: Complemental strand, 15695743 - 15695585
Alignment:
| Q |
458 |
ggacaaaccttatgtttcatttaaagataaatttttcatcgccacattttttcacaattccaaaaccaaaaccctgaaatctcgtaaacctcatcttctt |
557 |
Q |
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|||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15695743 |
ggacaaaccttatgtttcgtttaaa-ataaatttatcatcgccacattttttcacaattccaaaaccaaaaccctgaaatctcgtaaacctcatcttctt |
15695645 |
T |
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| Q |
558 |
cctcctccgtacacgacggttaccatcaccatggcaaaactactttctctctctaccctc |
617 |
Q |
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| T |
15695644 |
cctcctccgtacacgacggttaccatcaccatggcaaaactactttctctctctaccctc |
15695585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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