View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14563_low_21 (Length: 212)

Name: NF14563_low_21
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14563_low_21
NF14563_low_21
[»] chr4 (5 HSPs)
chr4 (2-198)||(28290067-28290266)
chr4 (15-110)||(28281815-28281910)
chr4 (14-75)||(28302889-28302949)
chr4 (157-198)||(28281950-28281991)
chr4 (155-198)||(28302978-28303021)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 28290067 - 28290266
Alignment:
Q  2 tcacagctttgatttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacatttttgtgaacttctaatcaagagtgttgat 101  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28290067 tcacagctttgatt-aatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacatttttgtgaacttctaatcaagagtgttggt 28290165  T
Q  102 gacttaaaggtcatgatatgtttgtacttcgctacgtgcatggtgatcta----gtatgaccctcaccatgtttggtgtattatgtttgtatactagtat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28290166 gacttaaaggtcatgatatgtttgtacttcgctacgtgcatggtgatctagtatgtatgaccctcaccatgtttggtgtattatgtttgtatactagtat 28290265  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 28281815 - 28281910
Alignment:
Q  15 ttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacatttttgtgaacttctaatcaagagtgttgatgacttaaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||    
T  28281815 ttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacatttttgtgaacttttaatcaatagtattggtgacttaaag 28281910  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 28302889 - 28302949
Alignment:
Q  14 tttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattttt 75  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  28302889 tttaatttcagggcgttctcttactgaatgctgttctcacaggttagata-tttacattttt 28302949  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 28281950 - 28281991
Alignment:
Q  157 accctcaccatgtttggtgtattatgtttgtatactagtatt 198  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  28281950 acccttactatgtttggtgtattatgtttgtatactagtatt 28281991  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 28302978 - 28303021
Alignment:
Q  155 tgaccctcaccatgtttggtgtattatgtttgtatactagtatt 198  Q
    ||||||| || ||||||||||||||||| |||||||||||||||    
T  28302978 tgaccctgactatgtttggtgtattatgcttgtatactagtatt 28303021  T

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