View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_low_24 (Length: 209)
Name: NF14563_low_24
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 46103228 - 46103421
Alignment:
| Q |
1 |
tatcaagactactgcaaagctatgagcaatctttctttaggtataatggagattctaggaatgagccttggagttggtaaagctcattttagggaatttt |
100 |
Q |
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| T |
46103228 |
tatcaagactactgcaaagctatgagcaatctttctttaggtataatggagattctaggaatgagccttggagttggtaaagctcattttagggaatttt |
46103327 |
T |
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| Q |
101 |
ttgaagagaatagttcaataatgaggctcaattactatcctacttgtcaaaaacctgagctcactctaggcactggacctcattgtgatccaac |
194 |
Q |
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| T |
46103328 |
ttgaagagaatagttcaataatgaggctcaattactatcctacttgtcaaaaacctgagctcactctaggcactggacctcattgtgatccaac |
46103421 |
T |
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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 22553624 - 22553461
Alignment:
| Q |
31 |
ctttctttaggtataatggagattctaggaatgagccttggagttggtaaagctcattttagggaattttttgaagagaatagttcaataatgaggctca |
130 |
Q |
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| T |
22553624 |
ctttctttggggataatggagcttcttggaatgagtcttggagttggaaaagattgttttagagatttttttgaagagaataaatcaataatgagactta |
22553525 |
T |
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| Q |
131 |
attactatcctacttgtcaaaaacctgagctcactctaggcactggacctcattgtgatccaac |
194 |
Q |
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|||| || || | |||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
22553524 |
attattacccaccatgtcaaaaacctgatctcactttaggaactggacctcattgtgatccaac |
22553461 |
T |
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