View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14563_low_4 (Length: 416)
Name: NF14563_low_4
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 34616259 - 34615852
Alignment:
| Q |
1 |
cataggatggattctctgtctctgatgatctgacatgaatactagttatttgcttagtagtgttctctcagatttttgtgataaaaaatggtaacaccct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34616259 |
catagggtggattctctgtctctgatgatctgacatgaatactagttatttgcttagtagtgttctctcagatttttgtgataaaaaatggtaacaccct |
34616160 |
T |
|
| Q |
101 |
tttgttgatgatttatgcagacattccttatttgaatactatttgtgaaaatactgttgggggtggattggttggttctgcaatatgtactgtggtgtgt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34616159 |
tttgttgatgctttatgcagacattccttatttgaatactaattgtgaaaatactgttgggggtggattggttggttctgcaatatgtactgtggtgtgt |
34616060 |
T |
|
| Q |
201 |
ggctaccttccttacctacaaactgtgtaaaacaccgaaaaaggtagtggtagttcagctaaatatgtatactgtgttgactttagacaagcttgggttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34616059 |
ggctaccttccttacctacaaactgtgtaaaacaccgaaaaaggtagtggtagttcagctaaatatgtatactgtgttgactttagacaagcttgggttc |
34615960 |
T |
|
| Q |
301 |
cttaaaatatttttcttttgttgagtatgtatgacagacacgattccttagctctaactaacccataagagtaacattatatgcacgtaacgtatcttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34615959 |
cttaaaatatttttcttttgttgagtatgtatgacagaaacgattccttagctctaactaacccataacagtaacattatatgcacgtaacgtatcttca |
34615860 |
T |
|
| Q |
401 |
tctcactc |
408 |
Q |
| |
|
| |||||| |
|
|
| T |
34615859 |
tatcactc |
34615852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 2476269 - 2476172
Alignment:
| Q |
162 |
ggtggattggttggttctgcaatatgtactgtggtgtgtggctaccttccttacctacaaactgtgtaaaacaccgaaaaaggtagtggtagttcagc |
259 |
Q |
| |
|
||||||||||||||||| ||| | ||||| |||| ||||| |||||||||||||||||||| |||| || | |||||| ||||||||||||||| |
|
|
| T |
2476269 |
ggtggattggttggttccacaagaggtactttggtatgtggttaccttccttacctacaaaccgtgtgtaaatctcaaaaagatagtggtagttcagc |
2476172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University