View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_low_5 (Length: 409)
Name: NF14563_low_5
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 148 - 401
Target Start/End: Original strand, 35766092 - 35766345
Alignment:
| Q |
148 |
atattcttttgcacgttcaccaacagaagcccaataccgttcccaggagttcgtttcattattttcaagttggttcaattcccatccatgagaagcataa |
247 |
Q |
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||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||| |
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| T |
35766092 |
atattcttttgcacgtttatcaacagaagcccaataacgttcccaggagtttgtttcatcattttcatgttggttcaattcccatccttgagaagcataa |
35766191 |
T |
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| Q |
248 |
tttggctcaggaggctttgttacttgttctttttcttcttcatccccccatccagtaggtatgattccaagatcggcaaaggacttcttcacaaggagag |
347 |
Q |
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||||| |||| ||| ||| |||| | |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
35766192 |
tttggttcagaaggttttcttacctcatctttttcctcttcgtccccccatccagtaggtacgattccaagatcggcaaaggacttcttcactaggagag |
35766291 |
T |
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| Q |
348 |
aattatcgataattagagtcacgtcgcgtttttcttccatgttgtcactggcct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766292 |
aattatcgataattagagtcacgtcgcgtttttcttccatgttgtcactggcct |
35766345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 35760612 - 35760768
Alignment:
| Q |
148 |
atattcttttgcacgttcaccaacagaagcccaataccgttcccaggagttcgtttcattattttcaagttggttcaattcccatccatgagaagcataa |
247 |
Q |
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||||||||||| | ||||| |||||| ||| | |||| ||||||| ||||| ||||||||||||||| |||||||| |||||||||| |||| ||||||| |
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| T |
35760612 |
atattcttttgaatgttcaacaacaggagcacgatactgttcccaagagtttgtttcattattttcatgttggttcgattcccatccctgagcagcataa |
35760711 |
T |
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| Q |
248 |
tttggctcaggaggctttgttacttgttctttttcttcttcatccccccatccagtaggt |
307 |
Q |
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|| || |||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
35760712 |
ttcggttcagaaggctttgttac---ttctttttcttcttcgtccccccatccagtaggt |
35760768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 35755301 - 35755429
Alignment:
| Q |
19 |
cttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttccccaattcccattccgaccatttcttccttgat-acactatgttatg |
117 |
Q |
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||||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||| |
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| T |
35755301 |
cttagaccatgacatgttgttttctctccttctgctatatccatcccatgttccccaattcccactcccaccatttcttccttgttggtact-tgttatg |
35755399 |
T |
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| Q |
118 |
caagttgctaccatagtgctccctctgaat |
147 |
Q |
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||||| | ||||||||||||||||||||| |
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| T |
35755400 |
caagtcaccaccatagtgctccctctgaat |
35755429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 35765933 - 35766055
Alignment:
| Q |
19 |
cttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttccccaattcccattccgaccatttcttccttgatacactatgttatgc |
118 |
Q |
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||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
35765933 |
cttagaccatgacatgttgt---ctctccttctgttatatccatcccatgttccccaattcccactcccaccatttcttccttgatac---ttgttatgc |
35766026 |
T |
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| Q |
119 |
aagttgctaccatagtgctccctctgaat |
147 |
Q |
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||||||| |||| || ||||||||||||| |
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| T |
35766027 |
aagttgccaccaaagcgctccctctgaat |
35766055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 35755504 - 35755618
Alignment:
| Q |
186 |
gttcccaggagttcgtttcattattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttc |
285 |
Q |
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||||||| ||||| ||||||||||||||| |||| || |||||||||| ||| ||||||||||||||||| ||||||| | |||| |||||||||||| |
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| T |
35755504 |
gttcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttctaacttcttctttttcttc |
35755603 |
T |
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| Q |
286 |
ttcatccccccatcc |
300 |
Q |
| |
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||| ||||||||||| |
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| T |
35755604 |
ttcgtccccccatcc |
35755618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 35785446 - 35785555
Alignment:
| Q |
35 |
ttgttttctctccttctgttgtaaccatcccatgttccccaattcccattccgaccatttcttccttgatacactatgttatgcaagttgctaccatagt |
134 |
Q |
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|||||||||||| ||||||| || |||||||||||| ||||||| | ||||| |||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
35785446 |
ttgttttctctctttctgttatacccatcccatgttgcccaattactattccaaccatttcttccttgata---tttgttatgcaagttgccaccatagt |
35785542 |
T |
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| Q |
135 |
gctccctctgaat |
147 |
Q |
| |
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|||||||||||| |
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| T |
35785543 |
tctccctctgaat |
35785555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 35760467 - 35760537
Alignment:
| Q |
36 |
tgttttctctccttctgttgtaaccatcccatgttccccaattcccattccgaccatttcttccttgatac |
106 |
Q |
| |
|
||||||||||| ||||||| || |||||||||| ||||||||| |||| || |||||||||||||||||| |
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| T |
35760467 |
tgttttctctctttctgttatatccatcccatgctccccaatttccatgcccgccatttcttccttgatac |
35760537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 35799092 - 35799201
Alignment:
| Q |
195 |
agttcgtttcattattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttcttcatcccc |
294 |
Q |
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|||| ||||||||||||||| ||||||| |||| ||||| ||| |||||||||||| |||| ||||||||||| | ||| |||||||| ||||| |
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| T |
35799092 |
agtttgtttcattattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaacttttc---gtcttcttcgtcccc |
35799188 |
T |
|
| Q |
295 |
ccatccagtaggt |
307 |
Q |
| |
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||||||||||||| |
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| T |
35799189 |
ccatccagtaggt |
35799201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 35789263 - 35789320
Alignment:
| Q |
21 |
tagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttccccaatt |
78 |
Q |
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||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
35789263 |
tagaccatgatatgttgttttctctccttctgttatatccatcccatgtcccccaatt |
35789320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 35798889 - 35798948
Alignment:
| Q |
19 |
cttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttccccaatt |
78 |
Q |
| |
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||||||||| | ||||||||||||| || ||||||| || |||||||||||||||||||| |
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| T |
35798889 |
cttagaccaagacatgttgttttctttctttctgttatatccatcccatgttccccaatt |
35798948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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