View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_low_8 (Length: 368)
Name: NF14563_low_8
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 44581726 - 44582068
Alignment:
| Q |
16 |
caaacaaatgagtgaacaaatacaaagggtttaatttatagccttaagcgatcaacgtcatggtgagataagataagaatcatattaaagacatgttctc |
115 |
Q |
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| T |
44581726 |
caaacaaaagagtgaacaaatataaagggtttaatttatagccttaagcgatcaacgtcatggtgagataagataagaatcatattaaagacatgttctc |
44581825 |
T |
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| Q |
116 |
atattttttactcatatgtcaatcaatttatttttgcaaaccatgggtggtccagttcacttctagacatcttcacctctaagaaagtacaaaaataagc |
215 |
Q |
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| T |
44581826 |
atattttttactcatatatcaatcaatttatttttgcaaaccatgggtggtccagttcacttctagacctcttcacctcgaagaaagtacaaaaataagc |
44581925 |
T |
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| Q |
216 |
tgtggtttcaggatatccaatcttggtatttaatttattttgatgttaatgtttaggggtaaagagatttgtggtttgattgtgaacacaacattcaatt |
315 |
Q |
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| T |
44581926 |
tgtggtttcaggatatccaatcttggtatttaatttattttgatgttaatgtttaggggtaaagagatttgtggcttgattgtgaacataacattcaatt |
44582025 |
T |
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| Q |
316 |
ttccaagcatttaaattaaacaaaataaacttctggcaatatt |
358 |
Q |
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| T |
44582026 |
ttccaagcatttaaattaagcaaaataaacttctggcaatatt |
44582068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 42221906 - 42221833
Alignment:
| Q |
174 |
acttctagacatcttcacctctaagaaagtacaaaaataagctgtggtttcaggatatccaatcttggtattta |
247 |
Q |
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| T |
42221906 |
acttgtagacatcttcacctctaagaaagtatgaaacaaagttgtggtttcatgatagctaatgctggtattta |
42221833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 1717203 - 1717149
Alignment:
| Q |
171 |
ttcacttctagacatcttcacctctaagaaagtacaaaaataagctgtggtttca |
225 |
Q |
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| T |
1717203 |
ttcacttctagacatcttcacctctaagaaagtatgaaacaaagttgtggtttca |
1717149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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