View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_high_11 (Length: 224)
Name: NF14564_high_11
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 5326519 - 5326327
Alignment:
| Q |
15 |
atgaacattatttatttatttttcattggactatacctccatgatagtgtcagcaccaaattccttcctccacttaagcatatctgtccacatttgtttt |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5326519 |
atgaacattatttatttatttttcattggactatagctccatgatagtgtcagcaccaaattccttcctccacttaagcatatctgtccacatttgtttt |
5326420 |
T |
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| Q |
115 |
gttttctctatgtcatactttcttgccctcaaaaatctagaccatggtacattaacattacaggtccattatagcgttgaaatcaaatcaagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5326419 |
gttttctctatgtcatactttcttgccctcaaaaatctagaccatggtacattaacattacaggtccattatagcgttgaaatcaaataaagg |
5326327 |
T |
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Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 54772683 - 54772492
Alignment:
| Q |
15 |
atgaacattatttatttatttttcattggactatacctccatgatagtgtcagcaccaaattccttcctccacttaagcatatctgtccacatttgtttt |
114 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54772683 |
atgaacatgatctatttatttttcattggactatacctccatgatagtgtcagcaccaaattccttcctccacttaagcatatctgtccacatttgtttt |
54772584 |
T |
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| Q |
115 |
gttttctctatgtcatactttcttgccctcaaaaatctagaccatggtacattaacattacaggtccattatagcgttgaaatcaaatcaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54772583 |
gttttctctatgtcatactttcttgccctcaaaaatctagaccatggtacattaacattacaggtccattatagcgttgaaatcaaatcaag |
54772492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 26638707 - 26638601
Alignment:
| Q |
47 |
atacctccatgatagtgtcagcaccaaattccttcctccacttaagcatatctgtccacatttgttttgttttctctatgtcatactttcttgccctcaa |
146 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||| |||||||| || |||||| |||| ||||| ||||| |
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| T |
26638707 |
atacctccatgatagtgtcagcaccaaattccctcctccattggagcatatctgcccacatttgctttgttttttcaatgtcaaacttccttgctctcaa |
26638608 |
T |
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| Q |
147 |
aaatcta |
153 |
Q |
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|||||| |
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| T |
26638607 |
gaatcta |
26638601 |
T |
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