View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_high_2 (Length: 362)
Name: NF14564_high_2
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 25813750 - 25813421
Alignment:
| Q |
15 |
gagatgaatcgcaagaatggggacaatcagatgaaaatattcagcaaacagttgatgttataagcttcctaacagcaaggttaatacatataatatttgt |
114 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25813750 |
gagatggatcacaagaatggggacaatcagatgaaaatattcagcaaacagttgatgttataagcttcctaacagcaaggttaatacatatactatttgt |
25813651 |
T |
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| Q |
115 |
acattttttcataataatccacacattatatgtttcaaattgatactttacttaccacatttatcatatatttctatgcgtcgacgcaggtatacaaaaa |
214 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25813650 |
acattttttcataataatccatacatcatatgtttcaaattgatactttacttaccacatttatcatatatttctatgcgt---cgcaggtatacaaaaa |
25813554 |
T |
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| Q |
215 |
accctagtctatatgcagttgaactcttaaacgaacctctctctccgggtgtaaccctagagaccttaaacaagtactacaaggctggttacgacgcggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25813553 |
accctagtctatatgcagttgaactcttaaacgaacctctctctccaggtgtaaccctagagaccataaacaagtactacaaggctggttacgacgcggt |
25813454 |
T |
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| Q |
315 |
gtgtaaacactccaccactacctatgtggttat |
347 |
Q |
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| T |
25813453 |
gcgtaaacactccaccactacctatgtggttat |
25813421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 202 - 347
Target Start/End: Complemental strand, 25788642 - 25788502
Alignment:
| Q |
202 |
aggtatacaaaaaaccctagtctatatgcagttgaactcttaaacgaacctctctctccgggtgtaaccctagagaccttaaacaagtactacaaggctg |
301 |
Q |
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| T |
25788642 |
aggtatacaaaaaaccctagtctatat-----tgaactcttaaacgaacctctctctccaggtgtaaccctagagaccataaacaagtactacaaggctg |
25788548 |
T |
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| Q |
302 |
gttacgacgcggtgtgtaaacactccaccactacctatgtggttat |
347 |
Q |
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| T |
25788547 |
gttactacgcggtgcgtaaacactccaccactacctatgtggttat |
25788502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 199 - 347
Target Start/End: Original strand, 25759103 - 25759258
Alignment:
| Q |
199 |
cgcaggtatacaaaaaaccctagtctatatgcagttgaactcttaaacgaac--ctctctctccgggtgtaaccctagagaccttaaacaagtactac-- |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25759103 |
cgcaggtatacaaaaaaccctagtctatatgcagttgaactcttaaacgaacctctctctctccaagtgtaaccctagagaccttaaacaagtactacaa |
25759202 |
T |
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| Q |
295 |
---aaggctggttacgacgcggtgtgtaaacactccaccactacctatgtggttat |
347 |
Q |
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| T |
25759203 |
gctaaggctggttacggcgcggtgcgtaaacactccaccactacctatgtggttat |
25759258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 12405522 - 12405484
Alignment:
| Q |
309 |
cgcggtgtgtaaacactccaccactacctatgtggttat |
347 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
12405522 |
cgcggtgcgtaaacactccaccactacctatgtggttat |
12405484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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