View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14564_high_4 (Length: 313)
Name: NF14564_high_4
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 7885507 - 7885284
Alignment:
| Q |
18 |
agcttgcacatgaggtcctgagcagtatgtgcaaacacaataatatgacgagcagcctgtgttatgaaaccttcatctgcagcaatgagttatagtaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7885507 |
agcttgcacatgaggtcctgagcagtatgtgcagacacaataatatgacgagcagcctgtgttatgaaaccttcatctacagcaatgagttatagtaacc |
7885408 |
T |
|
| Q |
118 |
atccacattcaacaatcccacctgc-------aatgcaattaatccatttttgcatttattaagattttttaatgttaaagaatctagtggcgaaactca |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7885407 |
atccacattcaacaatcccacctgcaatatataatgcaatcaatccattttttcatttattaagattttttaatgttaaagaatctagtggcgaaactca |
7885308 |
T |
|
| Q |
211 |
cacacaaaaagtgtagagaacatg |
234 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
7885307 |
cacacacaaagtgtagagaacatg |
7885284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 7885256 - 7885172
Alignment:
| Q |
229 |
aacatgtcaaatgttagtttaagatactttttaaacattccattacacttctattgagagtatatgcttacaggtttatcatgaa |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7885256 |
aacatgtcaaatgttactttaagatactttttaaacattccattacacttctattgagagtatatgcttacaggtttatcatgaa |
7885172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University