View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_12 (Length: 290)
Name: NF14564_low_12
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 32887586 - 32887632
Alignment:
| Q |
63 |
ttttaattttggacttagaattgtaggttctatttctaggtctttga |
109 |
Q |
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| T |
32887586 |
ttttatttttggacttagaattgtaggttctatttctaggtctttga |
32887632 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 32887452 - 32887495
Alignment:
| Q |
117 |
tggttgctggagctatcatggataattaatataagtagtggtaa |
160 |
Q |
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| T |
32887452 |
tggttgttggagctatcatggataattaatataagtagtggtaa |
32887495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 32887519 - 32887607
Alignment:
| Q |
157 |
gtaaggaaattgagttcatctcttgttttaaggc----aacttagaat----tgtattgagcaagagttttaattttggacttagaatt |
237 |
Q |
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| T |
32887519 |
gtaaggaaattgagttcatctcttgttttaaggctagttactttgcatggtgtgtattgagcaagagttttatttttggacttagaatt |
32887607 |
T |
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