View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_15 (Length: 236)
Name: NF14564_low_15
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 7891299 - 7891496
Alignment:
| Q |
19 |
tctctagttacctggtgtccatcacccaaaatcctgaaatattggcagcttcaaagagtgcgtctctataacgtattgacttgtcttccgtcaagatgcc |
118 |
Q |
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| T |
7891299 |
tctctagttacctggtgtccatcatccgaaatcctgaaatattggcagcttcaaagagcgcgtctctataacgtattgagctgtcttctgtcaagatgcc |
7891398 |
T |
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| Q |
119 |
tcgtgcaatacaatctacaaaagcttctccaaacacccccttctgattttgtacatcggagggatcaacatcatagaacacaggcacaactacctgct |
216 |
Q |
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| T |
7891399 |
tcgtgcaatacaatctacaaaagcttctccaaacacccccttctgttttagtacatcggagggatcaacatcatagaacacaggcacaaatacctgct |
7891496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 10033916 - 10033771
Alignment:
| Q |
62 |
ggcagcttcaaagagtgcgtctctataacgtattgacttgtcttccgtcaagatgcctcgtgcaatacaatctacaaaagcttctccaaacacccccttc |
161 |
Q |
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| T |
10033916 |
ggcagcttcaatgagcgcttttctataacagattgactcgtctttcgtcaagatgcttcgtgcaataagatcttcaaaagcctctccaaacattcctttc |
10033817 |
T |
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| Q |
162 |
tgattttgtacatcggagggatcaacatcatagaacacaggcacaa |
207 |
Q |
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| T |
10033816 |
cgatagcgtacataggaaggatcaacattatagaacaaaggcacaa |
10033771 |
T |
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