View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_16 (Length: 234)
Name: NF14564_low_16
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31935620 - 31935853
Alignment:
| Q |
1 |
aaaatgtgatagtataatcatccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagatttaggacaagcagatttaaacat |
100 |
Q |
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| T |
31935620 |
aaaatgtgatagtataatcatccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagatttaggacaagcagatttaaacat |
31935719 |
T |
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| Q |
101 |
ttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctattacacgcg |
200 |
Q |
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| T |
31935720 |
ttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccactacaacaatactccggtgtcccaaacgcgccacacgcgctattacacgcg |
31935819 |
T |
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| Q |
201 |
tcaccaccgtccacactcagctccgagggacacc |
234 |
Q |
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| T |
31935820 |
tcaccaccgtccactctcagctccgagggacacc |
31935853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 27975359 - 27975539
Alignment:
| Q |
20 |
atccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagatttaggacaagcagatttaaacatttccgaataaaccgaaggc |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||| | || |||||||| ||| |||| |||||| ||||||||||||||| |||| ||| || |
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| T |
27975359 |
atccgcagcagtacaagtaaaagtactcgaagcatcatcataagcgtagctatacgatctagggcaagcatttttaaacatttccgagtaaatcgacggt |
27975458 |
T |
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| Q |
120 |
gaacaactcgatggcgaaccaaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctattacacgcg |
200 |
Q |
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| T |
27975459 |
ctacaagtcgccggtgaaccatacgcgccactacaacaatactcaggactaccaaaagcctcacacgcgctcttacacgcg |
27975539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 8810782 - 8810723
Alignment:
| Q |
140 |
aaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctattacacgc |
199 |
Q |
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||||||||| |||||||||| |||||| |||||||||| ||||| || ||||||||||| |
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| T |
8810782 |
aaacgcgccgttacaacaatattccggtttcccaaacgcgccacaagcactattacacgc |
8810723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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