View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_2 (Length: 562)
Name: NF14564_low_2
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 4021868 - 4022415
Alignment:
| Q |
1 |
ttggggatcaacctttatgcgatcagttccctgttctctttaatttggcagatgatataccaaattatttaagttgtattggagtctcacacaggttgtc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021868 |
ttgggaatcaacctttatgcgatcagttccctgttctctttaatttggcagatgatataccaaattatttaagttgtattggagtctcacacaggttgtc |
4021967 |
T |
|
| Q |
101 |
gggagattttaaggaaaaatccaagttcatttaacatagtatttgagttgggttaaggatttaaattgtcagatttaagtgctatatatgaatactaaca |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021968 |
gggagattttaaggaaaaatccatgttcatttaacatagtatttgagttgggttaaggatttaaattgtcagatttaagtgctatatatgaatactaaca |
4022067 |
T |
|
| Q |
201 |
attggtcaaggaaactctttggcagcaagtgaagcttccccctaccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattc |
300 |
Q |
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| T |
4022068 |
attggtcaaggaaactctttggcagcaagtgaagcttccccctaccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattc |
4022167 |
T |
|
| Q |
301 |
aacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagat |
400 |
Q |
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| T |
4022168 |
aacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagat |
4022267 |
T |
|
| Q |
401 |
aacctacaacttccaattacctctgaagtcattgtcctatagcttcattttcaacctatatataaggctaaatcaagaaatatttgtttgttatcacaag |
500 |
Q |
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| T |
4022268 |
aacctacaacttccaattacctctgaagtcattgtcctatagcttcattttcaacctatatataaggctaaatcaagaaatatttgtttgttatcacaag |
4022367 |
T |
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| Q |
501 |
ataatttccatttacttgcatacaaagaacaatcagtgagatgagttt |
548 |
Q |
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| T |
4022368 |
ataatttccatttacttgcatacaaagaacaatcagtgagatgagttt |
4022415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 243 - 548
Target Start/End: Original strand, 4006759 - 4007066
Alignment:
| Q |
243 |
taccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattcaacaaattttatttttgttatttaaatgaagttacactttaa |
342 |
Q |
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|||| ||||||||||||| || ||| |||||| ||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| | |
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| T |
4006759 |
taccacaaaccaaccacagatttgtgcctccttaaaaaaatctacttatgaagaattcaataaattttatttttgttaattaaatgaacttacactttca |
4006858 |
T |
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| Q |
343 |
tgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagataacctacaacttccaattacctctgaagtcattgtcctatag |
442 |
Q |
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| T |
4006859 |
tgtgttacaaataaaacc-aatcatagaagttctcagttaaacaagaaaaccagagataacctataactttcaattacctctgaagttctggtcctacag |
4006957 |
T |
|
| Q |
443 |
cttcattttcaacctatatataaggctaaatcaagaaatatttgtttgttat--cacaaga-taatttccatttacttgcatacaaagaacaatcagtga |
539 |
Q |
| |
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| T |
4006958 |
cttcattttcaacctagctagaaggaaaaatcaagaaatatttttttgttataacacaagattaatttccattcagtttcatataaagaaaattcagtga |
4007057 |
T |
|
| Q |
540 |
gatgagttt |
548 |
Q |
| |
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||||||| |
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| T |
4007058 |
tctgagttt |
4007066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 3807361 - 3807446
Alignment:
| Q |
297 |
attcaacaaattttatttttgttatttaaatgaagttaca--------ctttaatgtgttacaaagaaaaattaattatagaagtt |
374 |
Q |
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| T |
3807361 |
attcaacaaatcttagttttgttatttaaatgaaattacacttttaatcttttatgtgttacaaagaaaaatcaattttagaagtt |
3807446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 3814805 - 3814890
Alignment:
| Q |
297 |
attcaacaaattttatttttgttatttaaatgaagttaca--------ctttaatgtgttacaaagaaaaattaattatagaagtt |
374 |
Q |
| |
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| T |
3814805 |
attcaacaaatcttagttttgttatttaaatgaaattacacttttaatcttttatgtgttacaaagaaaaatcaattttagaagtt |
3814890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 3958635 - 3958508
Alignment:
| Q |
299 |
tcaacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaatt----aattatagaagttctcagttaaacagaaaaact |
394 |
Q |
| |
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| T |
3958635 |
tcaacaaatctaatttttgttacttagcataacttagactttcatgtgttacaaagaaaaattaatcaattatagcagttctcatttaaagaagaaagtt |
3958536 |
T |
|
| Q |
395 |
agagataacctacaacttccaattacct |
422 |
Q |
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| T |
3958535 |
aaagataacctacaacttacgattacct |
3958508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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