View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_3 (Length: 546)
Name: NF14564_low_3
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 34118876 - 34119227
Alignment:
| Q |
14 |
cacagaagcaaaacaagagccaatcatccactatttaaccacttagctaagtagagaggatattgtcagacacaattttttgtcactgtccatattccct |
113 |
Q |
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| T |
34118876 |
cacagaagcaaaacaagagccaatcatccactatttaaccacttagctaagtagagaggatattgtcagacacagttttttgtcactgtccatattccct |
34118975 |
T |
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| Q |
114 |
caaagtatctaaattgttggcctaccataacaccatttagtatttgcatttgcatgtataccaagtcaagtgtatatatcaccagtgtcatgtttatatc |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34118976 |
caaagtatctcaattgttggcctaccataacaccatttagtatttgcatttgcatgtataccaagtcaagtgtatatatcaccagtgtcatgtttatatc |
34119075 |
T |
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| Q |
214 |
atttgatactacatgtcacatgaaattggtcccacattttttgattgtaaatatttgatttgttcataggtgtataataaaataaagtaggctttgtttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34119076 |
atttgatactacatgtcacatgaaattggtcccacattttttgattgtaaatatttgatttgttcataggtgtataataaaataaagtaggctttgtttg |
34119175 |
T |
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| Q |
314 |
accttgttaattccactaattgatatggatatagcaactattgtccaaagga |
365 |
Q |
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| T |
34119176 |
accttgttaattccactaattgatatggatatagcaactattgtccaaagga |
34119227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 34119297 - 34119393
Alignment:
| Q |
435 |
cgctgtgccttgctgatataaatttgtgaatattataggtacatattatataatgattctaattcaatcattatgttagcttgctcagtcttcttac |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34119297 |
cgctgtgccttgctgatataaatttgtgaatattataggtacatattatataatgattctaattcaatcattatgttagcttgctcagtcttcttac |
34119393 |
T |
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