View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14564_low_4 (Length: 436)

Name: NF14564_low_4
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14564_low_4
NF14564_low_4
[»] chr3 (4 HSPs)
chr3 (7-431)||(51199880-51200304)
chr3 (143-193)||(52708625-52708675)
chr3 (143-191)||(22508738-22508786)
chr3 (143-195)||(45267304-45267356)
[»] chr4 (1 HSPs)
chr4 (143-193)||(19674415-19674465)
[»] chr6 (1 HSPs)
chr6 (143-204)||(21165236-21165297)
[»] chr1 (6 HSPs)
chr1 (144-193)||(48334141-48334190)
chr1 (143-193)||(9774896-9774946)
chr1 (147-193)||(24427381-24427427)
chr1 (143-193)||(37396848-37396898)
chr1 (143-193)||(50164404-50164454)
chr1 (143-203)||(27264224-27264284)
[»] chr8 (5 HSPs)
chr8 (143-199)||(10718456-10718512)
chr8 (143-193)||(10717122-10717172)
chr8 (143-193)||(36588223-36588273)
chr8 (143-193)||(39440430-39440480)
chr8 (143-192)||(3483635-3483684)
[»] chr7 (3 HSPs)
chr7 (144-203)||(39619800-39619859)
chr7 (144-193)||(24197112-24197161)
chr7 (143-191)||(11217079-11217127)
[»] scaffold0517 (1 HSPs)
scaffold0517 (143-193)||(10316-10366)
[»] scaffold0095 (1 HSPs)
scaffold0095 (143-193)||(42763-42813)
[»] scaffold0001 (1 HSPs)
scaffold0001 (143-193)||(119594-119644)
[»] chr2 (1 HSPs)
chr2 (143-193)||(1777470-1777520)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 51199880 - 51200304
Alignment:
Q  7 ctatggtttggtttgggagggctattggaaaaaacaacaaaagacaagaaatatggttccccgatctgaactggaggactcaaaaatatgcattggagga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  51199880 ctatggtttggtttgggagggctattggaaaaaacaacaaaagacaagaaatatggttccctgatctgaactggaggactcaaaaatatgcattggaaga 51199979  T
Q  107 aaatgctagagggcttnnnnnnntagacattacaacgaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaaaa 206  Q
    ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51199980 aaatgctagagggcttaaaaaaatagacattacagcgaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttaagcttatatataaaaa 51200079  T
Q  207 gatagtttatatgattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaattgaaataaacgatggaggtcgttttattgtgagaaa 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  51200080 gatagtttatataattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaatcgaaataaacgatcgaggtcgttttattgtgagaaa 51200179  T
Q  307 tagagtttaaaatataaactttccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaagttgacctgcta 406  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51200180 tagagtttaaaatataaactgtccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaagttgacctgtta 51200279  T
Q  407 aaaatccatgtaatattcgtctgtg 431  Q
    |||||||||||| ||||||| ||||    
T  51200280 aaaatccatgtattattcgtttgtg 51200304  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 52708625 - 52708675
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  52708625 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 52708675  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 22508786 - 22508738
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 191  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||    
T  22508786 gaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 45267356 - 45267304
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagctt 195  Q
    ||||||||||| ||||||||||||||| | ||| ||||  |||||||||||||    
T  45267356 gaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagctt 45267304  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 19674465 - 19674415
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  19674465 gaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagc 19674415  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 21165297 - 21165236
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaa 204  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||  |||||||||    
T  21165297 gaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagccaatatataaa 21165236  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 48334141 - 48334190
Alignment:
Q  144 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    |||||||||| || |||||||||||||| |||||||| ||||||||||||    
T  48334141 accaaaactcaaattcgctatatttgtagggaccaaaagcatattttagc 48334190  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 9774896 - 9774946
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  9774896 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 9774946  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 24427381 - 24427427
Alignment:
Q  147 aaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24427381 aaaactcaaactcgctatatttgtagggaccaaaaacatattttagc 24427427  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 37396848 - 37396898
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  37396848 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 37396898  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 50164454 - 50164404
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  50164454 gaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagc 50164404  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 27264224 - 27264284
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 203  Q
    ||||||||| | ||||||||||||||| | ||||||||  ||||||||||| |||| ||||    
T  27264224 gaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctataaataa 27264284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 10718456 - 10718512
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatat 199  Q
    ||||||||| | ||||||||||||||| | |||||||| |||||||||||| |||||    
T  10718456 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctatat 10718512  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 10717172 - 10717122
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  10717172 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 10717122  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 36588273 - 36588223
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  36588273 gaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagc 36588223  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 39440430 - 39440480
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  39440430 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 3483684 - 3483635
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttag 192  Q
    ||||||||||| ||||||||||||||| | ||||||||  ||||||||||    
T  3483684 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 39619800 - 39619859
Alignment:
Q  144 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 203  Q
    |||||||| | ||||||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcctatttataa 39619859  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 24197112 - 24197161
Alignment:
Q  144 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    |||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  24197112 accaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 24197161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 11217079 - 11217127
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 191  Q
    |||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  11217079 gaccaaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

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Target: scaffold0517 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 10366 - 10316
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  10366 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 10316  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 42763 - 42813
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  42763 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 119644 - 119594
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  119644 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 119594  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 1777520 - 1777470
Alignment:
Q  143 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 193  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||||    
T  1777520 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagc 1777470  T

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