View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_5 (Length: 419)
Name: NF14564_low_5
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 2821672 - 2821272
Alignment:
| Q |
1 |
taatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagatatcataagatatattctatg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2821672 |
taatcctaagagatgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagatattataagatatattctatg |
2821573 |
T |
|
| Q |
101 |
attcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821572 |
attcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaa |
2821473 |
T |
|
| Q |
201 |
cttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821472 |
cttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcattagcatcaatcttgattagccgaataaacaaattcattcaaatgaaatg |
2821373 |
T |
|
| Q |
301 |
gttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccagaaa |
400 |
Q |
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| T |
2821372 |
gttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccagaaa |
2821273 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
|
| |
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|
| T |
2821272 |
t |
2821272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 350
Target Start/End: Original strand, 2834828 - 2835031
Alignment:
| Q |
140 |
gaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaa |
239 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||| || ||| |||| |||| ||||||||||||| | ||||||||||||| ||| |
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| T |
2834828 |
gaaatgatggatggatgaaaccggttggctgagacgcatacata----tcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataa |
2834923 |
T |
|
| Q |
240 |
tgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttg---attattattacaagagatgaagtaaagttc |
336 |
Q |
| |
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||||| | ||||| ||| || ||||| |||||| | ||||||||| ||||| |||||||| |||||||||||||| | ||||| |||| || |
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| T |
2834924 |
cgatag------tagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattacaagggttgaaggaaagctc |
2835017 |
T |
|
| Q |
337 |
tcaccaatcttaaa |
350 |
Q |
| |
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||||||||||||| |
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|
| T |
2835018 |
ccaccaatcttaaa |
2835031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 2771991 - 2771858
Alignment:
| Q |
177 |
atacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaat |
276 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| | || | |||||||| | | ||||||| | ||||||| |||| ||||| ||| |
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| T |
2771991 |
atacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatag------tagcatcaagcttggttagcaaaat |
2771898 |
T |
|
| Q |
277 |
aaacaaattcattcaaatgaaatggttttgattattatta |
316 |
Q |
| |
|
||||| ||||||| |||||| | |||||||||||||||| |
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|
| T |
2771897 |
aaacatattcatttgaatgaagtagttttgattattatta |
2771858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 2771816 - 2771782
Alignment:
| Q |
364 |
agaaatatcaaaaagacgtctgaatggagtccaga |
398 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
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|
| T |
2771816 |
agaaatatcaaaacgacgtctgaatggagtccaga |
2771782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 11114579 - 11114630
Alignment:
| Q |
179 |
acatacatgtcctcctgattaacttcaaatcaactaggcatataaatttaca |
230 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||| |||||||||| |
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| T |
11114579 |
acatacatgtccttctgattaacttcaaatcaaccacacatctaaatttaca |
11114630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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