View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14564_low_6 (Length: 392)
Name: NF14564_low_6
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14564_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 3629693 - 3630049
Alignment:
| Q |
14 |
ttatactgagataaggaagagtttgtatcctcaagcttgtttggttttgggattaactccgaaatcactcgtatcgaagatctgagtttaattgaactga |
113 |
Q |
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| T |
3629693 |
ttatgctgagataaggaagagtttgtatcctcaagcttgtttggttttgggattaactccgaaatcactcgtatcgaagatctgagtttaattgaactga |
3629792 |
T |
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| Q |
114 |
atttgattatgttttaatgaatgtgagcttgcattttgtgttagtgcgtcttttgattgacgataagtttgacgaatctttgaagtgtagcctagcctct |
213 |
Q |
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| T |
3629793 |
atttgattatgttttaatgaatgtgagcttgca--ttgtgttagtgcgtcttttgattgacgataagtttgacgaatctttgaagtgtagcctagcctct |
3629890 |
T |
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| Q |
214 |
gtcaaaaatgacagtgatacatcgtgattcagtcaaacttatcggcaatgcaaatatgtacttagtggattgttggatgaagctgttgaataa-ttattt |
312 |
Q |
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| T |
3629891 |
gtc-aaaatgacagtgatacatcgtgattcagtcaaacttatcagcaatgcaaagatgtacttagtggattgttggatgaagctgttgaataatttattt |
3629989 |
T |
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| Q |
313 |
atgcaaattataccatgtgcatagagttacataaatatatatatcaaagtttcttagtattgtt |
376 |
Q |
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| T |
3629990 |
atgcaaattataccatgtgcatagagtcacataa----atatatcaaagtttcttagtattgtt |
3630049 |
T |
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