View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14564_low_9 (Length: 356)

Name: NF14564_low_9
Description: NF14564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14564_low_9
NF14564_low_9
[»] chr4 (10 HSPs)
chr4 (1-347)||(24986055-24986401)
chr4 (16-347)||(25000762-25001091)
chr4 (85-347)||(25046542-25046804)
chr4 (258-330)||(25168726-25168798)
chr4 (258-330)||(25252468-25252540)
chr4 (257-339)||(25160164-25160246)
chr4 (256-339)||(25180392-25180475)
chr4 (259-330)||(25189340-25189411)
chr4 (266-347)||(25017633-25017714)
chr4 (266-347)||(25038740-25038821)
[»] chr3 (2 HSPs)
chr3 (256-330)||(9213708-9213782)
chr3 (261-327)||(8091587-8091653)
[»] chr2 (1 HSPs)
chr2 (261-346)||(42167210-42167295)
[»] chr8 (1 HSPs)
chr8 (150-201)||(4633222-4633273)
[»] chr6 (2 HSPs)
chr6 (258-330)||(29406212-29406284)
chr6 (258-306)||(29460043-29460091)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 24986055 - 24986401
Alignment:
Q  1 agatcaagtctcatgttatttgaatttcaggacataaagatttcagtgccgaatttgaataatattttgcttttaaaaacagaagacctgatatttggtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  24986055 agatcaagtctcatgttatttgaatttcaggacataaagatttcagtgccgaatttgaataatatttttcttttaaaaacagaaaacctgatatttggtc 24986154  T
Q  101 ttgtatagttttgtagcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggttcggtccctgaatcgcctcctgtgcaattcagatttaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24986155 ttgtatagttttgtagcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggctcggtccctgaatcgcctcctgtgcaattcagatttaacc 24986254  T
Q  201 aatctgaacatcgacccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986255 aatctgaacatcgacccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcacc 24986354  T
Q  301 aaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24986355 aaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 24986401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 25001091 - 25000762
Alignment:
Q  16 ttatttgaatttcaggacataaagatttcagtgccgaatttgaataatattttgcttttaaaaacagaagacctgatatttggtcttgtatagttttgta 115  Q
    |||||||||||||| |||||||||||   ||| |||||||||||||| |||||| |||||||| |||  ||||||||||||||||  ||| ||||||  |    
T  25001091 ttatttgaatttcaagacataaagatca-agttccgaatttgaataacattttggttttaaaa-cagcggacctgatatttggtccggtacagttttaca 25000994  T
Q  116 gcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggttcggtccctgaatcgcctcctgtgcaattcagatttaaccaatctgaacatcgac 215  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  25000993 gcagcagcatgagcgagaagttggtagtgtgcagccaaatatggttcggtccctgaatcaccacctgtgcaattcagatttaaccaatctgaacatcgac 25000894  T
Q  216 ccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  25000893 ccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagca 25000794  T
Q  316 aagttcagcatagtccttaaaatcatctctgc 347  Q
    |||||||||||||||| |||||||||||||||    
T  25000793 aagttcagcatagtccctaaaatcatctctgc 25000762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 85 - 347
Target Start/End: Original strand, 25046542 - 25046804
Alignment:
Q  85 gacctgatatttggtcttgtatagttttgtagcagcagcatgagcaagaagttggtagtgtgcagtcaaatatggttcggtccctgaatcgcctcctgtg 184  Q
    ||||||||| ||||||||||| | ||||  ||| |||| ||||||||||||||||||||| | ||||| ||||||||| ||||| ||||| |||||||||    
T  25046542 gacctgatacttggtcttgtacaattttacagctgcagaatgagcaagaagttggtagtgcgaagtcagatatggttctgtcccagaatctcctcctgtg 25046641  T
Q  185 caattcagatttaaccaatctgaacatcgacccggtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaat 284  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||   ||| ||  ||||| | |||||||||| |||||||||||||||| |||||     
T  25046642 caattcagttttaaccaatctgaacatcgacccggtgcaaaccttccgactgcgtatccattcttactcacactccttggttcattcaaagtagtccaac 25046741  T
Q  285 gtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 347  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  25046742 gtttcaccctatcaccaaattccttgaagcaaagatcagcatagtccttaaaatcatttctgc 25046804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 25168726 - 25168798
Alignment:
Q  258 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 330  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||||   ||| |||||||||| ||||||||    
T  25168726 tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtc 25168798  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 25252540 - 25252468
Alignment:
Q  258 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 330  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||||   ||| |||||||||| ||||||||    
T  25252540 tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtc 25252468  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 25160164 - 25160246
Alignment:
Q  257 ctccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 339  Q
    |||||||| || |||||||||| |||||  || || |||||||||||||||||| | |||||||| |||||||| | ||||||    
T  25160164 ctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatc 25160246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 25180392 - 25180475
Alignment:
Q  256 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 339  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   ||  |||||||||| |||||||| | ||||||    
T  25180392 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 25180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 25189340 - 25189411
Alignment:
Q  259 ccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 330  Q
    ||||||||| || ||||||| ||| |  ||||| ||||| |||||||||||| ||||||| |||||||||||    
T  25189340 ccatggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagcaaagatcagcatagtc 25189411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 25017633 - 25017714
Alignment:
Q  266 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 347  Q
    ||||| || ||||||||||| ||||| |  || |||||||||||| |||| || || |||||||||| |||||||| |||||    
T  25017633 tcattgaaggtaatccaatgcttcactcggtctccaaattccttgaagcatagctcggcatagtcctgaaaatcatttctgc 25017714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 25038740 - 25038821
Alignment:
Q  266 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgc 347  Q
    ||||| || ||||||||||| ||||| ||||| || ||||||||| |||| || || |||||||| | |||||||| |||||    
T  25038740 tcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgc 25038821  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 9213782 - 9213708
Alignment:
Q  256 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 330  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||  |||||||||||||||||||    
T  9213782 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtc 9213708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 8091653 - 8091587
Alignment:
Q  261 atggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcata 327  Q
    ||||||||||||| ||||||||||| || ||||| |||||||||||  || |||| ||||| |||||    
T  8091653 atggttcattcaatgtaatccaatgcttaaccctgtcaccaaattcactgaagcatagttctgcata 8091587  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 42167210 - 42167295
Alignment:
Q  261 atggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctg 346  Q
    |||| ||||| |||||||||||||  ||||||||||| ||||| || ||| | |||||||| |||||||| | |||||||| ||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctg 42167295  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 4633222 - 4633273
Alignment:
Q  150 tcaaatatggttcggtccctgaatcgcctcctgtgcaattcagatttaacca 201  Q
    ||||||||||||| ||||||||||| ||||||  |||||||| |||||||||    
T  4633222 tcaaatatggttctgtccctgaatcacctcctaagcaattcatatttaacca 4633273  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 29406284 - 29406212
Alignment:
Q  258 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 330  Q
    ||||||| || ||||| || |||||||| ||||||||||| || |||||||| || ||||| || ||||||||    
T  29406284 tccatggctcgttcaatgtgatccaatgcttcaccctatctccgaattccttataacaaagctctgcatagtc 29406212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 29460043 - 29460091
Alignment:
Q  258 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattc 306  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||    
T  29460043 tccatggttcattcaatgtgatccaatgctttaccctatctccaaattc 29460091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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