View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_high_10 (Length: 415)
Name: NF14565_high_10
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 29 - 415
Target Start/End: Complemental strand, 45348142 - 45347756
Alignment:
| Q |
29 |
tcatgtttgagtgtatttttagaaaatatattttatacaaacttactatgcaaagttttgtattcaattgatgatcaaataaatcatgtgcattaattaa |
128 |
Q |
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| T |
45348142 |
tcatgtttgagtgtatttttagaaaatatattttatacaaacttactatgcaaagttttgtattcaattgatgatcaaataaatcatgtgcattaattaa |
45348043 |
T |
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| Q |
129 |
catggtatggtaatgtacatatttatttatagctctcaagctgagaatcattactacataatacatatatgcactgcacataaatatagataaaatcaaa |
228 |
Q |
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| T |
45348042 |
catgatatggtaatgtacatatttatttatagctctcaagctgagaatcattactacataatacatacatgcactgcacataaatatagataaaatcaaa |
45347943 |
T |
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| Q |
229 |
ggaaggaacttaggatgatggaaatagaaagataacctgcttgcccatcttaacgacggcatatggatcactagtattaacatcacgaacggcgaggttg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45347942 |
ggaaggaacttaggatgatggaaatagaaagataacctgcttgcccatcttaacgacggcatatggatcactagtattaacatcacgaacggcgaggttg |
45347843 |
T |
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| Q |
329 |
acgccacgcttaatgtgggtccttagaagtccgaggaggtcttccatcaatgacttaccgctatctccccctccgttatgtgtcgaa |
415 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45347842 |
acgccacgcttaatgcggatccttagaagtccgaggaggtcttccatcaatgacttaccgctatctccccctccgttatgtgtcgaa |
45347756 |
T |
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