View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_high_2 (Length: 715)
Name: NF14565_high_2
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 641
Target Start/End: Complemental strand, 8158014 - 8157399
Alignment:
| Q |
16 |
atgaagttggagaagccagagaggtagaaacctgcactattgcaaataatacccccaaaaccagctcgggttgaagttccaatacaacttcagtctacgt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
8158014 |
atgaagttggagaagctagagaggtagaaacctgcactattgcgaataatacccccaaagacagctctagttggagttccaatacaacttccgtctacgt |
8157915 |
T |
|
| Q |
116 |
taatgatatgatagagattattattgttgttccattcaaccatgcgatctgaaggagcaataccactgttactctaaaagctcgatttaattttaattct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
8157914 |
taatgatatgatagagattattattgttgttccatttaaccatgcgatctgaaggagcaataccactg--------aaagcttgatctaattttaattct |
8157823 |
T |
|
| Q |
216 |
gaatgttgatgcaaagacgagttgaggaccaggttttattactaagacacattgtattgcaataaataataactaaattatgatagnnnnnnnnnnnngg |
315 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||| || ||||||||||||| || |
|
|
| T |
8157822 |
gaatgttgatgctaagacgagttggggactaggttttattactccgacacatcgtattgcaataaataaaaaataaattatgatag----aaaaaagagg |
8157727 |
T |
|
| Q |
316 |
agcaaattttggagggaatttggatgaataaaaagatgacacttataa-nnnnnnnaataaaaataacattactttaatatagtagatatggtagattag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8157726 |
agcaaattttggagggaatttggatgaataaaaagatgacacttataattttttttaataaaaataacattactttaatatagtagatatggtagattag |
8157627 |
T |
|
| Q |
415 |
tcattttgcaaacctgannnnnnnngttaatactataatgcgctgtcaatataaagttattttacgg--nnnnnnnntgatatgttgtcacaccatttaa |
512 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||| | |||||| |||||||| ||||||| |
|
|
| T |
8157626 |
tcattttgcaaacttgatttttgttgttaatactataatgccctgtcaacataaagttattttacagacgcatacaatgatattttgtcaca-catttaa |
8157528 |
T |
|
| Q |
513 |
tgtgtttaaattaacgtgagatcaaattgatgcgtgtataacataactttacattgttttttcaagggaaacctatatagaaattgaactttatattttt |
612 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8157527 |
tgtgtttaaattgacgtgagatcaaattgatgcatgtataacataactttacatcgttttttcaagagaaacctatatagaaattgaactttatattttt |
8157428 |
T |
|
| Q |
613 |
aagcgagaaattaaactctattataaagt |
641 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8157427 |
aagcgagaaattaaactctattataaagt |
8157399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 699
Target Start/End: Complemental strand, 8157105 - 8157067
Alignment:
| Q |
661 |
gaaaaaactgtatgcgtgctatgtggatggatggtattg |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8157105 |
gaaaaaactgtatgcgtgctatgtggatggatggtattg |
8157067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 667
Target Start/End: Complemental strand, 8157378 - 8157341
Alignment:
| Q |
630 |
ctattataaagtatctattgatgcaatcatggaaaaaa |
667 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8157378 |
ctattataaagtatctattggtgcaatcatggaaaaaa |
8157341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University