View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_high_20 (Length: 350)

Name: NF14565_high_20
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_high_20
NF14565_high_20
[»] chr3 (3 HSPs)
chr3 (1-331)||(49282085-49282415)
chr3 (70-331)||(13786597-13786860)
chr3 (111-331)||(13786343-13786564)
[»] chr4 (3 HSPs)
chr4 (1-331)||(13935429-13935761)
chr4 (199-286)||(10397227-10397314)
chr4 (191-289)||(7284951-7285049)
[»] chr6 (4 HSPs)
chr6 (35-331)||(13306795-13307093)
chr6 (35-331)||(14596783-14597081)
chr6 (1-38)||(13309334-13309371)
chr6 (1-38)||(14592198-14592235)
[»] chr5 (1 HSPs)
chr5 (34-331)||(6839300-6839599)
[»] chr1 (1 HSPs)
chr1 (108-289)||(15999245-15999426)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 49282085 - 49282415
Alignment:
Q  1 taactcttcattctctacttctctaatggcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcatgtacctttggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49282085 taactcttcattctctacttctctaatggcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcatgtacctttggc 49282184  T
Q  101 tacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49282185 tacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcagactctagagtgtgc 49282284  T
Q  201 taacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaatgattaa 300  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||    
T  49282285 taacatgttggacgtcccatttaatttagaatcacaatgatatcttttatggcagtgtttacaagcggctgtaggttctggttcattggataatggataa 49282384  T
Q  301 aatcaagccaaacgagagatgttctcctatt 331  Q
    |||||||||||||||||||||||||||||||    
T  49282385 aatcaagccaaacgagagatgttctcctatt 49282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 70 - 331
Target Start/End: Complemental strand, 13786860 - 13786597
Alignment:
Q  70 atccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttc 168  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13786860 atccctacaatcttttgcattgtacctttggctaactgaaactagaaaatcacccttcccatttataagatttgtttgcctagggtcatttagcatgttc 13786761  T
Q  169 tctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcgg 268  Q
    ||||||||||||||| | |||||| |||||||||||||| ||||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  13786760 tctggtttcttaaggtagactctacagtgtgctaacatgctggacttcccatttaatttagaatcacaacgatatcttttatggcagtgtttacaagcgg 13786661  T
Q  269 ctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctcctatt 331  Q
     ||||||||||  ||||||||||||| |||||||||||||||||||| |||| |||||||||||    
T  13786660 ttgtaggttctcattcattgggtaatggattaaaatcaagccaaacgggagaggttctcctatt 13786597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 111 - 331
Target Start/End: Complemental strand, 13786564 - 13786343
Alignment:
Q  111 tagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||| ||    
T  13786564 tagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctgatttcttaaggtagactctacagtgtgctaacatgctg 13786465  T
Q  211 gacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagcc 309  Q
    ||| |||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  13786464 gacttcccatttaatttagaatcacaacgatatcttttatggcagtgtttacaagcggttgtaggttctcgttcattgggtaatggattaaaatcaagcc 13786365  T
Q  310 aaacgagagatgttctcctatt 331  Q
    |||||  ||| |||||||||||    
T  13786364 aaacggaagaggttctcctatt 13786343  T

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Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 13935761 - 13935429
Alignment:
Q  1 taactcttcattctctacttctctaatggcatgggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttgg 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| ||||||||||    
T  13935761 taactctgcattctctacttctctaatggcatgggcatgttcgtcaaggataacaaagttggttacgacatcactataatcttttgcattgtacctttgg 13935662  T
Q  100 ctacttgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtg 199  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13935661 ctagctgaaactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcagactctagagtgtg 13935562  T
Q  200 ctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gatt 298  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  13935561 ctaacatgttggacgttccatttaatttagaatcacaatggtatcttttatggcagtgtttacacgcggctgtaggttctggttcattgggtaatggatt 13935462  T
Q  299 aaaatcaagccaaacgagagatgttctcctatt 331  Q
    |||||||||||||||| |||| |||||||||||    
T  13935461 aaaatcaagccaaacgggagaggttctcctatt 13935429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 10397227 - 10397314
Alignment:
Q  199 gctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcat 286  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||| |||| ||||| ||||||    
T  10397227 gctaacatgttggatgtcctgtttaatttagaatcacaatgatatctatcatggcagtgtttacaagcggttgtaagttctagttcat 10397314  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 7285049 - 7284951
Alignment:
Q  191 tagagtgtgctaacatgttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgg 289  Q
    ||||||||||||||||| |||| ||||| | |  ||||||||||||| | |||| | |||| || ||||||||||| ||| ||||||||||||||||||    
T  7285049 tagagtgtgctaacatgctggatgtcccatgtgctttagaatcacaacgatatcgtctatgacaatgtttacaagctgctttaggttctggttcattgg 7284951  T

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Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 35 - 331
Target Start/End: Complemental strand, 13307093 - 13306795
Alignment:
Q  35 gcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattta 133  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  13307093 gcatgttcgtcaaggataacaaagttggttacagcatccctacaatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattta 13306994  T
Q  134 taagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaatc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  13306993 taagatttttttgcctagggtcatttagcatgttctctggtttcttaaggcagactctacagtgtgctaacatgttggacgtcccatttaatttagaatc 13306894  T
Q  234 acaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctcctatt 331  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||    
T  13306893 acaacggtatcttttatggcagtgtttacaagcggctgtatgttctggttcatcgggtaatggattaaaatcaagccaaacgggagaggttctcctatt 13306795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 35 - 331
Target Start/End: Original strand, 14596783 - 14597081
Alignment:
Q  35 gcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattta 133  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  14596783 gcatgttcgtcaaggataacaaagttggttacggcatccctacagtcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattta 14596882  T
Q  134 taagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaatc 233  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||| ||||||||||||||    
T  14596883 taagatttgtttgcctaggtacatttagcatgttctctggtttcttaaggcagactctaaagcgtgttaacatgttggacgtcccatttaatttagaatc 14596982  T
Q  234 acaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggtaat-gattaaaatcaagccaaacgagagatgttctcctatt 331  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||||    
T  14596983 acaatggcatcttttatggcagtgtttacaagcggctgtaggttctggtttattgggtaatggattaaaatcaagccaaacgggagaggttctcctatt 14597081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13309371 - 13309334
Alignment:
Q  1 taactcttcattctctacttctctaatggcatgggcat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13309371 taactcttcattctctacttctctaatggcatgggcat 13309334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14592198 - 14592235
Alignment:
Q  1 taactcttcattctctacttctctaatggcatgggcat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14592198 taactcttcattctctacttctctaatggcatgggcat 14592235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 331
Target Start/End: Original strand, 6839300 - 6839599
Alignment:
Q  34 ggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattt 132  Q
    ||||||||| |||||| | |||||||| ||||  || | |||||| ||| |||||| |||||||||| |    | |||||| ||||||||||| ||| ||    
T  6839300 ggcatgttcatcaaggatgacaaagtttgttaaagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccactt 6839399  T
Q  133 ataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatgttggacgtcccgtttaatttagaat 232  Q
    | ||| |||| |||||||| ||| |||| ||||||    ||||| | ||| || | | ||| ||||||||||||| | || ||||| | |  ||||||||    
T  6839400 acaaggtttgattgcctagtgtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctagatgtcccatgtgctttagaat 6839499  T
Q  233 cacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgggt-aatgattaaaatcaagccaaacgagagatgttctcctatt 331  Q
     |||  | |||| ||||||||| ||||||||| | ||| |||||||||||||||||||| || | |||||||| | ||||||  |||| |||||||||||    
T  6839500 gacagcgatatcgtttatggcaatgtttacaaactgctataggttctggttcattgggtaaagggttaaaatctaaccaaacaggagaggttctcctatt 6839599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 15999426 - 15999245
Alignment:
Q  108 aactagaaaaccacccttcccatttataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcatactctagagtgtgctaacatg 207  Q
    |||||| ||||||||||| ||| ||| ||| |||| |||||||||||  |||| ||||||    ||||| | ||| || | | ||| |||||||||||||    
T  15999426 aactagcaaaccaccctttccacttacaaggtttgattgcctagggtattttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatg 15999327  T
Q  208 ttggacgtcccgtttaatttagaatcacaatggtatcttttatggcagtgtttacaagcggctgtaggttctggttcattgg 289  Q
     |||| ||||| | |  |||||||| ||| || |||| ||||||||| ||||||||||| |||  |||||||||||||||||    
T  15999326 ctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagctgctacaggttctggttcattgg 15999245  T

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