View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_high_25 (Length: 324)
Name: NF14565_high_25
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42393614 - 42393308
Alignment:
| Q |
1 |
ttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393614 |
ttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccact |
42393515 |
T |
|
| Q |
101 |
tctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393514 |
tctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagac |
42393415 |
T |
|
| Q |
201 |
ccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42393414 |
ccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccctttggtt |
42393315 |
T |
|
| Q |
301 |
ctggaag |
307 |
Q |
| |
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||||||| |
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| T |
42393314 |
ctggaag |
42393308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42377062 - 42376756
Alignment:
| Q |
1 |
ttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccact |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||||| ||||| |||||||||| |
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| T |
42377062 |
ttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgtttacaccctgcacttccact |
42376963 |
T |
|
| Q |
101 |
tctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagac |
200 |
Q |
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| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||||||||||||||||||||||| |
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| T |
42376962 |
tttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacgtttgggctattcatagagac |
42376863 |
T |
|
| Q |
201 |
ccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttggtt |
300 |
Q |
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|||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| | |
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| T |
42376862 |
ccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttggct |
42376763 |
T |
|
| Q |
301 |
ctggaag |
307 |
Q |
| |
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||||||| |
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| T |
42376762 |
ctggaag |
42376756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 42387411 - 42387228
Alignment:
| Q |
1 |
ttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42387411 |
ttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccaacacttccact |
42387312 |
T |
|
| Q |
101 |
tctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttg |
184 |
Q |
| |
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| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||||||| |
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| T |
42387311 |
tttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacgtttg |
42387228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 42387220 - 42387152
Alignment:
| Q |
239 |
aaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttggttctggaag |
307 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttggctctggaag |
42387152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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