View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_high_27 (Length: 310)
Name: NF14565_high_27
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_27 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 21993095 - 21992788
Alignment:
| Q |
1 |
tcttctaactgcaaaagaaataaacaaaattcaacgtgaattcagtactcatttcttgctctatatgtatatgcaattgagtttgtgatgattat---ag |
97 |
Q |
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| T |
21993095 |
tcttctaactgcaaaagaaataaacaaaactcaacgtgaattcagtactcatttcttgctctatatgtatatgcaattgagtttgtgatgattattatag |
21992996 |
T |
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| Q |
98 |
atggcctcagcatatcataatgcattgtccctacaaccggtcatcttcatggtgagatttagtaaaattttaagttgtcaatatatagtatttaaagtct |
197 |
Q |
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| T |
21992995 |
atagcctcaacatataataatgcattgtccctacaaccggtcatcttcatggtgagatttagtaaa-ttttacgttgtcaatatatagta----aagtct |
21992901 |
T |
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| Q |
198 |
aaattattacctccaatcattctcagataaatacttatatgatcacaagcttaaataaaaccaatttaggaacacacataacaatacattttatttaatt |
297 |
Q |
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| T |
21992900 |
aaattattacctccaatcattctcagataaatacttatatgatcacaagcttaaataaaaccaatttaggaacacacataacaatacattttatttaatt |
21992801 |
T |
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| Q |
298 |
aagtgaaaaatac |
310 |
Q |
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| T |
21992800 |
aagtgaaaaatac |
21992788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 2296401 - 2296360
Alignment:
| Q |
269 |
acacacataacaatacattttatttaattaagtgaaaaatac |
310 |
Q |
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| T |
2296401 |
acacacataacaatacattttatttaattatgtcaaaaatac |
2296360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 2312215 - 2312174
Alignment:
| Q |
269 |
acacacataacaatacattttatttaattaagtgaaaaatac |
310 |
Q |
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| T |
2312215 |
acacacataacaatacattttatttaattatgtcaaaaatac |
2312174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 29211883 - 29211920
Alignment:
| Q |
261 |
atttaggaacacacataacaatacattttatttaatta |
298 |
Q |
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| T |
29211883 |
atttaggcacacacataacaatacatattatttaatta |
29211920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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