View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_high_48 (Length: 215)
Name: NF14565_high_48
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5481102 - 5480905
Alignment:
| Q |
1 |
atgtgttgtgtctatctcacatgtaccataataatattgttcacacttcctcgtacccacatacacatgtttcccatcatgtcctgtcccttttccaccc |
100 |
Q |
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| T |
5481102 |
atgtgttgtgtctatctcacatgtaccataataatattgttcacacttcctcgtacccacatacacatgtttcccatcatgtcctgtcccttttccaccc |
5481003 |
T |
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| Q |
101 |
ttatcattattatttcataactaccatgacaaataaccgt----gtcataataaaaatataactaatcgtagcgatcagggctgaatatactgaatct |
194 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
5481002 |
ttatcattattatttcataactaccataacaaataaccgtgacagtcataataaaaatataacgaatcgtagcgatcaggattgaatatactgaatct |
5480905 |
T |
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