View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_high_49 (Length: 213)
Name: NF14565_high_49
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 36330637 - 36330460
Alignment:
| Q |
19 |
ggcaaagatgatcatagcaaagacaatagcaatggtggatattccaaatccccaattccatcctttgttgttttgtatccatacattaaatgttaagctg |
118 |
Q |
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| T |
36330637 |
ggcaaagatgatcatagcaaagacaatagcaatggtggatattccaaatccccaatcccatcctttgctgttttgtatccatacattaaatgttaagctg |
36330538 |
T |
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| Q |
119 |
acagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctagacatttgtcttgtttctttgggatctttt |
196 |
Q |
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| T |
36330537 |
acagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctagacatttgtcttgtttctttgggatctttt |
36330460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 36323795 - 36323614
Alignment:
| Q |
15 |
caaaggcaaagatgatcatagcaaagacaatagcaatggtggatattccaaatccccaattccatcctttgttgttttgtatccatacattaaatgttaa |
114 |
Q |
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| T |
36323795 |
caaaggcaaaggtgatcatagcaaagacaatagcaatggtggagattcccaaacccaaatcccatcctttgttgtcttgtatccatacattaaaagttaa |
36323696 |
T |
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| Q |
115 |
gctgacagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctagacatttgtcttgtttctttgggatctttt |
196 |
Q |
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| T |
36323695 |
gctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgtttctttgggatctttt |
36323614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 37920089 - 37919962
Alignment:
| Q |
69 |
cccaattccatcctttgttgttttgtatccatacattaaatgttaagctgacagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctaga |
168 |
Q |
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|||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
37920089 |
cccaatcccaccctttgctgttttgtatctatacattaaatgttaagttgacagaaccatcaatgcaaacaacaagtaagagaacattaaataagctaga |
37919990 |
T |
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| Q |
169 |
catttgtcttgtttctttgggatctttt |
196 |
Q |
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| T |
37919989 |
catttgtcttgtttctttgagatctttt |
37919962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 5459014 - 5458914
Alignment:
| Q |
62 |
ccaaatccccaattccatcctttgttgttttgtatccatacattaaatgttaagctgacagaaccaccaatgcaaacagcaagcaagagagcattaaaga |
161 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||| | || ||||||||||| | |||||| ||||||||||||||||||||| ||||||||| |
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| T |
5459014 |
ccaaatccccaatcccatcctttgttgatttgtatccatacaatgaaagttaagctgactgcaccacccatgcaaacagcaagcaagagaacattaaaga |
5458915 |
T |
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| Q |
162 |
a |
162 |
Q |
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| T |
5458914 |
a |
5458914 |
T |
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