View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_high_5 (Length: 578)

Name: NF14565_high_5
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_high_5
NF14565_high_5
[»] chr2 (16 HSPs)
chr2 (11-452)||(12055114-12055555)
chr2 (11-195)||(43525192-43525376)
chr2 (16-187)||(30397769-30397938)
chr2 (31-190)||(5088556-5088715)
chr2 (31-186)||(9844878-9845033)
chr2 (211-303)||(12043548-12043640)
chr2 (508-561)||(12055611-12055664)
chr2 (25-184)||(34429158-34429319)
chr2 (211-278)||(12048452-12048519)
chr2 (508-559)||(12075277-12075329)
chr2 (117-192)||(1285652-1285727)
chr2 (115-144)||(22464633-22464662)
chr2 (115-144)||(22483512-22483541)
chr2 (115-144)||(34526315-34526344)
chr2 (31-67)||(5885482-5885518)
chr2 (358-442)||(12043978-12044056)
[»] chr5 (11 HSPs)
chr5 (11-195)||(14009436-14009620)
chr5 (11-195)||(23121070-23121254)
chr5 (11-195)||(28313249-28313433)
chr5 (43-181)||(22270418-22270556)
chr5 (31-181)||(37259043-37259192)
chr5 (35-122)||(15155200-15155287)
chr5 (25-187)||(35635124-35635289)
chr5 (31-79)||(19663187-19663235)
chr5 (31-67)||(19677002-19677038)
chr5 (25-187)||(38395185-38395350)
chr5 (115-144)||(26540838-26540867)
[»] chr8 (13 HSPs)
chr8 (11-195)||(12868399-12868583)
chr8 (31-181)||(42809510-42809660)
chr8 (103-195)||(42471607-42471699)
chr8 (95-181)||(33363573-33363659)
chr8 (119-190)||(18427525-18427596)
chr8 (31-179)||(32382089-32382237)
chr8 (31-179)||(32436044-32436192)
chr8 (129-195)||(42466326-42466392)
chr8 (115-195)||(42478874-42478954)
chr8 (212-293)||(25016822-25016899)
chr8 (212-294)||(2402720-2402802)
chr8 (115-144)||(16532814-16532843)
chr8 (31-92)||(20098941-20099002)
[»] chr7 (9 HSPs)
chr7 (11-195)||(41596586-41596770)
chr7 (31-190)||(37126506-37126665)
chr7 (24-109)||(33532043-33532128)
chr7 (37-195)||(31294107-31294252)
chr7 (31-187)||(8363613-8363769)
chr7 (97-181)||(31421850-31421934)
chr7 (31-157)||(18294989-18295115)
chr7 (148-195)||(33531998-33532045)
chr7 (115-144)||(26493897-26493926)
[»] chr3 (10 HSPs)
chr3 (11-195)||(22509673-22509857)
chr3 (11-189)||(39621891-39622069)
chr3 (31-190)||(8425374-8425533)
chr3 (14-126)||(39703004-39703116)
chr3 (27-181)||(40925527-40925681)
chr3 (97-181)||(2736481-2736565)
chr3 (120-181)||(22126655-22126716)
chr3 (211-277)||(7896294-7896360)
chr3 (31-109)||(54788819-54788897)
chr3 (115-144)||(53710361-53710390)
[»] scaffold0129 (1 HSPs)
scaffold0129 (11-195)||(7624-7808)
[»] chr4 (15 HSPs)
chr4 (11-195)||(14461507-14461691)
chr4 (11-195)||(2664873-2665057)
chr4 (31-190)||(55404904-55405063)
chr4 (14-126)||(42883696-42883808)
chr4 (97-181)||(14797467-14797550)
chr4 (95-181)||(37466120-37466206)
chr4 (31-109)||(27599196-27599274)
chr4 (11-87)||(6025486-6025562)
chr4 (11-63)||(9475040-9475092)
chr4 (31-67)||(43335463-43335499)
chr4 (31-66)||(16401058-16401093)
chr4 (117-192)||(17625463-17625538)
chr4 (115-144)||(27364846-27364875)
chr4 (115-144)||(55464843-55464872)
chr4 (35-122)||(37058085-37058173)
[»] chr6 (5 HSPs)
chr6 (24-188)||(15667189-15667353)
chr6 (31-190)||(97132-97291)
chr6 (41-169)||(10895129-10895257)
chr6 (29-189)||(33694247-33694407)
chr6 (25-186)||(27156563-27156724)
[»] chr1 (9 HSPs)
chr1 (11-195)||(20256447-20256618)
chr1 (31-187)||(27132906-27133062)
chr1 (37-116)||(44316141-44316220)
chr1 (31-187)||(51065115-51065270)
chr1 (31-169)||(11052607-11052745)
chr1 (24-190)||(25537053-25537219)
chr1 (212-293)||(6430701-6430782)
chr1 (115-144)||(21973971-21974000)
chr1 (103-191)||(52181978-52182069)
[»] scaffold0005 (1 HSPs)
scaffold0005 (97-181)||(42181-42264)
[»] scaffold0024 (1 HSPs)
scaffold0024 (102-148)||(12024-12070)
[»] scaffold0168 (1 HSPs)
scaffold0168 (115-144)||(15777-15806)
[»] scaffold0019 (1 HSPs)
scaffold0019 (115-144)||(135037-135066)
[»] scaffold0012 (1 HSPs)
scaffold0012 (115-144)||(197068-197097)
[»] scaffold0007 (1 HSPs)
scaffold0007 (115-143)||(259882-259910)


Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Original strand, 12055114 - 12055555
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  12055114 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatgctatcatttagaaacccacttcccattttgtttctc 12055213  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagtataaattaaatatgtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12055214 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaagctggaagagtcatgataaggcggagtataaattaaatatgtg 12055313  T
Q  211 atatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatgaatctcgaattgataaggatgtttatttccctt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12055314 atatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatgaatctcgaatcgataaggatgtttatttccctt 12055413  T
Q  311 gtagtgtaatgcaatatgtcctgataccaggtttatgtgggtgagtagtagtaacacattacccctttttccctgcatcagtccaaaggcagaacagaaa 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12055414 gtagtgtaatgcaatatgtcctgataccaggtttctgtgggtgagtagtagtaacacattacccctttttccctgcatcagtccaaaggcagaacagaaa 12055513  T
Q  411 aaatgggatcttatggattctggccagtaatgtgatcaatcc 452  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12055514 aaatgggatcttatggattctggccagtaatgtgatcaatcc 12055555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 43525376 - 43525192
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  ||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  43525376 atcatcaataactgactcagaactaatacttgcactagtttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 43525277  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43525276 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagta 43525192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 30397938 - 30397769
Alignment:
Q  16 caatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacct 115  Q
    |||| ||||||||| |||| |||||||||||||||||| |||| |||||||| || ||| ||| |||||||||| || ||||||| || ||||| || ||    
T  30397938 caataaccaactcagaactgatacttgcactaatttccttttcgatataaactgttatgctataatttagaaactcatttcccatcttatttctcaatct 30397839  T
Q  116 agtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataag 187  Q
    |||||| ||||||||| ||||||||||  || ||| |||||||   |||||||||||||||||| |||||||    
T  30397838 agtcttcataatcttctttgctgaaaa--atatctaagttgtgattgtagaaactggaagagtcgtgataag 30397769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 5088715 - 5088556
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||  |||||||||||| |||||||||||||| | |||| ||||   |||| | |||   |||||||||||||| ||| | | ||||||||| ||    
T  5088715 aactaatagatgcactaatttctctttcaatataaactgacatgctatctgctagatatccagggcccattttgtttctcaacttggacttgataatttt 5088616  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||    
T  5088615 cattgctgaaaaagatctttcagttgtggctgtagaaactgaaagagtcataataaggcg 5088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 9844878 - 9845033
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||| |||| |||||| ||||||||||||||| | |||| ||||   |||||||| |  |||| | |||||||| ||| ||| ||||||||| ||    
T  9844878 aactaatacatgcagtaattttcctttcaatataaactgacatgctatcggctagaaacctaagtcccgtcttgtttctcaacttagacttgataatttt 9844977  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataa 186  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||    
T  9844978 cattgctgaaaaagatctttcagttgtggcggtagaaactggaagaatcataataa 9845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 12043548 - 12043640
Alignment:
Q  211 atatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatgaatctcgaattgataaggatgtttat 303  Q
    |||||||| ||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||    
T  12043548 atatcttatgattcattataagattcaacccacgatttggaaaatagttcttctggttcacgttatgaatcttaaattgataacgatgtttat 12043640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 561
Target Start/End: Original strand, 12055611 - 12055664
Alignment:
Q  508 ttagatacttgaatatgaatatagttaggaactatttaaatgaatgaatgtcgt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12055611 ttagatacttgaatatgaatatagttaggaactatttaaatgaatgaatgtcgt 12055664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 34429319 - 34429158
Alignment:
Q  25 actcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatt---tagaaacccacttcccattttgtttcttaacctagtctt 121  Q
    |||||||||||||||||||| |||||||| ||||||||||||   ||||  |||||||   |||| || ||| || ||| || ||||| ||| |||||||    
T  34429319 actcataactaatacttgcattaatttccttttcaatataaattttcatactatcattaattagatactcacatctcatcttatttctcaacttagtctt 34429220  T
Q  122 gataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgat 184  Q
    |||||||||||| | |||||||||||| ||||||||||   ||||||||| | ||||||||||    
T  34429219 gataatcttcat-gttgaaaaagatctatcagttgtggttatagaaactgaacgagtcatgat 34429158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 12048452 - 12048519
Alignment:
Q  211 atatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatga 278  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | |||||||    
T  12048452 atatcttacgattcattataagattcgatccacaatttggaaaatagttcttccggttgatgttatga 12048519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 12075277 - 12075329
Alignment:
Q  508 ttagatacttgaatatgaatatagttaggaacta-tttaaatgaatgaatgtc 559  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||| |||||    
T  12075277 ttagatacttgaatatgaatatggttaggaacaattttaaatgaatggatgtc 12075329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 1285652 - 1285727
Alignment:
Q  117 gtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcgga 192  Q
    |||||||| | ||||||||||||||| ||||| || || || || |||||||| |||||||| | |||||||||||    
T  1285652 gtcttgattaacttcattgctgaaaatgatctttctgtagtagctgtagaaaccggaagagttaagataaggcgga 1285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 22464662 - 22464633
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  22464662 tagtcttgataatcttcattgctgaaaaag 22464633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 22483541 - 22483512
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  22483541 tagtcttgataatcttcattgctgaaaaag 22483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 34526344 - 34526315
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  34526344 tagtcttgataatcttcattgctgaaaaag 34526315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 5885482 - 5885518
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaac 67  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  5885482 aactaatacatgcactaattcccctttcaatataaac 5885518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 442
Target Start/End: Original strand, 12043978 - 12044056
Alignment:
Q  358 gtagtaacacattacccctttttccctgcatcagtccaaaggcagaacagaaaaaatgggatcttatggattctggccagtaatg 442  Q
    |||||||||||||| || |||| |||||||||| ||||||||     |||||||||||||||||| || | ||| ||||||||||    
T  12043978 gtagtaacacattatccatttt-ccctgcatcaatccaaagg-----cagaaaaaatgggatcttttgaactctagccagtaatg 12044056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 14009620 - 14009436
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  14009620 atcatcaataactgactcataactaatacttgcactaatttcccttttgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 14009521  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14009520 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagta 14009436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 23121070 - 23121254
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  23121070 atcatcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 23121169  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  23121170 aacctagtcttgataatcttcgttgctgaaaaagatctctcagttgttgctgtagaaactggaagagtcatgataaggcggagta 23121254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 28313433 - 28313249
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||     
T  28313433 atcatcaataactaactcagaactaatacttgcactaatttcactttcaatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctc 28313334  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||    
T  28313333 aacctagtcttgataatcttcattgccgaaaaagatctctcagttgtgactgtagaaactagaagagtcatgataaggcgaagta 28313249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 22270418 - 22270556
Alignment:
Q  43 cactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatcttcattgctgaaaa 142  Q
    ||||||| ||||||||||| ||||| | |||| |||    || |||||||  | |||| |||||||| ||| |||  || ||||| ||||||||||||||    
T  22270418 cactaatatccctttcaatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttaataattttcattgctgaaaa 22270517  T
Q  143 agatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||||| ||||||||||| |||||||| |||||||||||    
T  22270518 agatctttcagttgtggctgtagaaaccggaagagtcat 22270556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 37259192 - 37259043
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||| ||||| ||||||| ||||||||||||| | |||| ||||| | |||||||||  |||||| || ||| | ||| | | ||| ||||| ||    
T  37259192 aactaatacatgcacaaatttccttttcaatataaactgacatgctatcact-agaaacccaggtcccatcttatttatcaactttgacttaataatttt 37259094  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
     ||||||||||||||||| || ||||| |  |||||||||| |||||||||    
T  37259093 gattgctgaaaaagatctttcggttgtagttgtagaaactgaaagagtcat 37259043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 15155200 - 15155287
Alignment:
Q  35 aatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttg 122  Q
    |||||||||||||||||||||||  |||||||| |||||| ||||  |||||||||  |   |||| |||||||| ||||||||||||    
T  15155200 aatacttgcactaatttcccttttgatataaactgtcatgttatctattagaaacctcccgtccatcttgtttctcaacctagtcttg 15155287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 35635124 - 35635289
Alignment:
Q  25 actcataactaatacttgcactaatttccctttcaatataaaccgtcatggtat---catttagaaacccacttcccattttgtttcttaacctagtctt 121  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||   |||| |||   |  | || ||||||  || ||| |||||| | ||| ||| |||    
T  35635124 actcagaactaatacatgcactaatttcccttttaatataaactaacatgttatctgctatcagtaacccaagtctcatcttgtttttcaacttagactt 35635223  T
Q  122 gataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataag 187  Q
    ||||||  ||||||||||||||||||| ||| || || | ||||||||| |||| ||||| |||||    
T  35635224 gataattctcattgctgaaaaagatctttcaattatgacggtagaaactagaagggtcataataag 35635289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 19663187 - 19663235
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatc 79  Q
    ||||||||| |||||||||||| |||||||||||||||| |||| ||||    
T  19663187 aactaatacatgcactaatttcactttcaatataaaccgacatgctatc 19663235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 19677002 - 19677038
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaac 67  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19677002 aactaatacatgcactaatttccctttcaatataaac 19677038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 38395185 - 38395350
Alignment:
Q  25 actcataactaatacttgcactaatttccctttcaatataaaccgtcatggtat---catttagaaacccacttcccattttgtttcttaacctagtctt 121  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||   |||| |||   |  | || |||| |  || ||| |||||||| ||| | | |||    
T  38395185 actcagaactaatacatgcactaatttcccttttaatataaactaacatgttatctgctatcagtaaccgaagtctcatcttgtttctcaactttgactt 38395284  T
Q  122 gataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataag 187  Q
    |||||| |||||||||||||||||||| ||| || || | ||||||| | |||| ||||| |||||    
T  38395285 gataattttcattgctgaaaaagatctttcaattatgacggtagaaattagaagggtcataataag 38395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 26540838 - 26540867
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  26540838 tagtcttgataatcttcattgctgaaaaag 26540867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 12868399 - 12868583
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  12868399 atcatcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 12868498  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12868499 aacctagtcttgataatattcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagta 12868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 42809660 - 42809510
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||| | ||||||| |||||||| || ||||| | |||| |||    || |||||||  |||||| |||||||| ||| |||  |||||||| ||    
T  42809660 aactaatacattcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatcttgtttctcaacttagatttgataatttt 42809561  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  42809560 cattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 42809510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 42471607 - 42471699
Alignment:
Q  103 tgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    ||||||| ||| ||||||||| ||| |||||||||||||||||||| || ||||  |||||| |||| ||||||||||||||||| |||||||    
T  42471607 tgtttctcaacatagtcttgaaaattttcattgctgaaaaagatctttcggttgcagccgtataaaccggaagagtcatgataagacggagta 42471699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 33363659 - 33363573
Alignment:
Q  95 tcccattttgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||||| |||||||| ||| |||  |||||||| ||||||||| |||||||||| ||||||||||| |||||||| |||||||||||    
T  33363659 tcccatcttgtttctcaacttagatttgataattttcattgctaaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 33363573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 18427596 - 18427525
Alignment:
Q  119 cttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    ||||||||| ||||||| ||||||| |||| ||||||||||| |||||||||||| ||||||| ||||||||    
T  18427596 cttgataattttcattgttgaaaaaaatctttcagttgtggctgtagaaactggatgagtcataataaggcg 18427525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 32382237 - 32382089
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||| | |||| |||||||||||| ||||||||| | |||  ||||   ||| || |||  |||||| |||||||| ||| |||  || ||||||||    
T  32382237 aactaatgcatgcagtaatttcccttttaatataaactgacatcttatctgctagtaaaccatgtcccatcttgtttctcaacttagagttaataatctt 32382138  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtc 179  Q
    ||||| |||||||||||| ||| |||| |  ||||||||||||||||||    
T  32382137 cattgttgaaaaagatctttcaattgtagtggtagaaactggaagagtc 32382089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 32436192 - 32436044
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||| | |||| |||||||||||| ||||||||| | |||  ||||   ||| || |||  |||||| |||||||| ||| |||  || ||||||||    
T  32436192 aactaatgcatgcagtaatttcccttttaatataaactgacatcttatctgctagtaaaccatgtcccatcttgtttctcaacttagagttaataatctt 32436093  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtc 179  Q
    ||||| |||||||||||| ||| |||| |  ||||||||||||||||||    
T  32436092 cattgttgaaaaagatctttcaattgtagtggtagaaactggaagagtc 32436044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 42466326 - 42466392
Alignment:
Q  129 ttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||  ||||||| || |||||||  |||||||| |||||||||||||||||||||||||    
T  42466326 ttcattgctgacgaagatctttcggttgtgggtgtagaaaccggaagagtcatgataaggcggagta 42466392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 42478874 - 42478954
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    ||||||||| ||| | |||| ||| ||||||||| || ||||| || |||||||| ||||||||||||||||| |||||||    
T  42478874 tagtcttgaaaatttccattcctgcaaaagatctttcggttgtagcagtagaaaccggaagagtcatgataagacggagta 42478954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 25016822 - 25016899
Alignment:
Q  212 tatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatgaatctcgaattgataa 293  Q
    ||||||| ||||||| |||||||||||| || |||||  ||||||||||||||| ||||    ||||||||||| |||||||    
T  25016822 tatcttaggattcataataagattcgattcacgatttaaaaaatagttcttccgattca----atgaatctcgatttgataa 25016899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 2402720 - 2402802
Alignment:
Q  212 tatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatgaatctcgaattgataag 294  Q
    |||||||||||||||  ||||||| ||| | ||||||  ||||||| ||||||| |||||| ||||||  |||| ||||||||    
T  2402720 tatcttacgattcatagtaagatttgattcgtgatttcaaaaataggtcttccgattcacgatatgaaattcgatttgataag 2402802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 16532814 - 16532843
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  16532814 tagtcttgataatcttcattgctgaaaaag 16532843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 20099002 - 20098941
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaaccca 92  Q
    |||||||| |||||||||||||| |||||||||||||   |||| ||||  |||||||||||    
T  20099002 aactaatatttgcactaatttccttttcaatataaacttacatgttatctgttagaaaccca 20098941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 5e-76; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 41596770 - 41596586
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  41596770 atcatcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 41596671  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  41596670 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagggtcatgataaggcggagta 41596586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 37126665 - 37126506
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||  ||||||||||||||||||||||||||| | |||| ||||   |||| |||||   ||||| |||||||| ||| | | ||||||||| ||    
T  37126665 aactaatagatgcactaatttccctttcaatataaactggcatgctatctgctagatacccagggcccatcttgtttctcaacttggacttgataatttt 37126566  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  37126565 cattgctgaaaaagatctttcagttgtggctgtagaaactggaagagtcataataaggcg 37126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 33532128 - 33532043
Alignment:
Q  24 aactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttct 109  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  33532128 aactcagaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttct 33532043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 31294252 - 31294107
Alignment:
Q  37 tacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatcttcattgc 136  Q
    |||||||||||||||||||||| |||||||||||| || |||  ||||||||||||||| ||||             ||||||||||||||||||||| |    
T  31294252 tacttgcactaatttccctttcgatataaaccgtcgtgctattgtttagaaacccactttccat-------------ctagtcttgataatcttcattac 31294166  T
Q  137 tgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||| ||||||||| || ||||||||||||||  || ||||||||||||||||||||    
T  31294165 tgaaaaggatctctcaattatggccgtagaaactaaaaaagtcatgataaggcggagta 31294107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 8363769 - 8363613
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||| ||| ||||||||||||||||||||||| | |||  ||||   |||| || ||  || ||| |||||||  ||| ||| ||||||||| ||    
T  8363769 aactaatacatgcgctaatttccctttcaatataaactgacatactatctgctagatactcaggtctcatattgtttcacaacttagacttgataatttt 8363670  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataag 187  Q
    |||||| ||||||||||| ||||||||||| |||||| | ||||| ||||| |||||    
T  8363669 cattgccgaaaaagatctttcagttgtggctgtagaatccggaagtgtcataataag 8363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 31421934 - 31421850
Alignment:
Q  97 ccattttgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||| |||||||| ||| |||  |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  31421934 ccatcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 31421850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 18295115 - 18294989
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||| ||| ||||||||||||||||||||||||||  | |||| ||||  ||||||| | |  ||| || || ||||||||| ||| ||||||||| ||    
T  18295115 aactagtacatgcactaatttccctttcaatataaattgacatgttatctattagaaatctaggtcctatattctttcttaacttagacttgataatttt 18295016  T
Q  131 cattgctgaaaaagatctctcagttgt 157  Q
    ||||||||||||| || | ||||||||    
T  18295015 cattgctgaaaaaaatatttcagttgt 18294989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 33532045 - 33531998
Alignment:
Q  148 tctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  33532045 tctcagttgtggctgtagaaactggaagagtcatgataaggcgaagta 33531998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 26493897 - 26493926
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  26493897 tagtcttgataatcttcattgctgaaaaag 26493926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 22509673 - 22509857
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  ||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  22509673 atcatcaataactgactcagaactaatacttgcactaatatccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 22509772  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  22509773 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaattggaagagtcatgataaggcggagta 22509857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 39622069 - 39621891
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| || || ||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||     
T  39622069 atcatcaataactaattcagaactaatacttgcactaatttccctttcgatattaaccgtcatgctatcatttagaaacccacttcccatcttgtttctc 39621970  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggc 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  39621969 aacctagtcttgataatcttcattgccgaaaaagatctctcagttgtggctgtagaaattggaagagtcatgataaggc 39621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 8425374 - 8425533
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||  ||||||||||||||||||||||||||| | |||| ||||   |||| |||||   | ||| |||||||| ||| | | ||||||||| ||    
T  8425374 aactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggctcatcttgtttctcaacttggacttgataatttt 8425473  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||    
T  8425474 cattgctgaaaaagatctttctgttgtggctgtagaaactggaagagtcataataaggcg 8425533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 39703116 - 39703004
Alignment:
Q  14 atcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaac 113  Q
    |||||| || |||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||| || ||||| |||    
T  39703116 atcaataactaactcagaactaatatttgcactaatttccctttcgatataaaccgtcatgctatcatttaaaaactcacttcccatcttatttctcaac 39703017  T
Q  114 ctagtcttgataa 126  Q
    ||| |||||||||    
T  39703016 ctaatcttgataa 39703004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 40925681 - 40925527
Alignment:
Q  27 tcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataa 126  Q
    |||||||||||||   ||||||| |||||||| || ||||| | |||| |||    || |||||||  | |||| |||||||| ||| |||  |||||||    
T  40925681 tcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 40925582  T
Q  127 tcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    | |||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  40925581 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 40925527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 2736565 - 2736481
Alignment:
Q  97 ccattttgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||| |||||||| ||| |||  |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  2736565 ccatcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 2736481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 22126655 - 22126716
Alignment:
Q  120 ttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  22126655 ttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 22126716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 7896360 - 7896294
Alignment:
Q  211 atatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatg 277  Q
    |||||||| ||||||| |||||||||||| ||  ||||||||||||||| ||||| |||||| ||||    
T  7896360 atatcttaagattcataataagattcgattcacaatttggaaaatagtttttccgattcacgatatg 7896294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 54788897 - 54788819
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttct 109  Q
    ||||||||| |||||||||||| |||||||||||| | | |||| ||||  |||||||| ||  |||||| ||||||||    
T  54788897 aactaatacatgcactaatttcactttcaatataatctgacatgttatctcttagaaactcaggtcccatcttgtttct 54788819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 53710390 - 53710361
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  53710390 tagtcttgataatcttcattgctgaaaaag 53710361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 7624 - 7808
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||     
T  7624 atcatcaataactaactcataactaatacttgcactaattttcctttcgatataaaccgtcatgctatcatttagaaacccacttccaatcttgtttctc 7723  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  7724 aacctagtcttcataatcttcattgctgaaaaagatctctcagttgtgactgtagaaattggaagagtcatgataaggcggagta 7808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 14461691 - 14461507
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| ||  ||||| |||||||||||||| ||||||||| ||  |||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  14461691 atcatcaataactgactcagaactaatacttgcattaatttcccgtttgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctc 14461592  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14461591 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagta 14461507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 2664873 - 2665057
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| || ||||||||||||||||||| ||||||| | ||||| |||||||||||||   ||||||||||||| ||||||||||| ||||||||     
T  2664873 atcatcaataactaactcataactaatacttgtactaattacactttcgatataaaccgtcagactatcatttagaaatccacttcccatcttgtttctc 2664972  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  2664973 aacctattcttgataatcttcattgttgaaaaagatctctcagttgtggctgtagaaactggaagactcatgataagacggagta 2665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 55405063 - 55404904
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||  ||||||||||||||||||||||||||| | |||| ||||   |||| |||||   ||||| |||||||| ||| | | ||||||||| ||    
T  55405063 aactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtttctcaacttggacttgataatttt 55404964  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  55404963 cattgctgaaaaagatctttcagttgtggctgtagaaactggaagagtcataataaggcg 55404904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 42883696 - 42883808
Alignment:
Q  14 atcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaac 113  Q
    |||||| || |||||| |||||||| ||||||||||||||||||| ||||||||| || ||  ||||||||||||||||||| |||| || | ||| |||    
T  42883696 atcaataactaactcagaactaatatttgcactaatttccctttcgatataaaccatcgtgccatcatttagaaacccactttccatcttatctctcaac 42883795  T
Q  114 ctagtcttgataa 126  Q
    || ||||||||||    
T  42883796 ctggtcttgataa 42883808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 14797467 - 14797550
Alignment:
Q  97 ccattttgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||| |||||||| ||| |||  |||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  14797467 ccatcttgtttctcaacttagatttgataattttcattgctgaaaa-gatctttcagttgtggctgtagaaaccggaagagtcat 14797550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 37466120 - 37466206
Alignment:
Q  95 tcccattttgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||||| |||||||| ||| |||  |||||||| ||||||||||||||| | || ||||||||||| |||||||| |||||| ||||    
T  37466120 tcccatcttgtttctcaacttagatttgataattttcattgctgaaaaaaacctttcagttgtggctgtagaaaccggaagaatcat 37466206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 27599274 - 27599196
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttct 109  Q
    ||||||||| ||||||||| ||||||||||||||||| | |||| |||| | ||||||||||  || ||| ||||||||    
T  27599274 aactaatacatgcactaatatccctttcaatataaactgacatgctatcttctagaaacccaagtctcatcttgtttct 27599196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 6025562 - 6025486
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaa 87  Q
    ||||||||| || || ||| ||||||||| | ||||||||| ||||||||||||||  |||||| ||| ||||||||    
T  6025562 atcatcaataacaaaatcaaaactaatacatacactaattttcctttcaatataaattgtcatgctataatttagaa 6025486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 9475040 - 9475092
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatat 63  Q
    ||||||||| || || ||| ||||||||||| |||||||||||||||||||||    
T  9475040 atcatcaataactaattcaaaactaatactttcactaatttccctttcaatat 9475092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 43335463 - 43335499
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaac 67  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43335463 aactaatacatgcactaatttccctttcaatataaac 43335499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 16401093 - 16401058
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaa 66  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16401093 aactaatacatgcactaatttccctttcaatataaa 16401058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 17625463 - 17625538
Alignment:
Q  117 gtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcgga 192  Q
    |||||||| | ||||||||||||||| ||||| || || || || |||||||| |||||||| | |||||||||||    
T  17625463 gtcttgattaacttcattgctgaaaatgatctttctgtagtagctgtagaaaccggaagagttaagataaggcgga 17625538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 27364875 - 27364846
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  27364875 tagtcttgataatcttcattgctgaaaaag 27364846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 55464843 - 55464872
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  55464843 tagtcttgataatcttcattgctgaaaaag 55464872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 37058085 - 37058173
Alignment:
Q  35 aatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacc-cacttcccattttgtttcttaacctagtcttg 122  Q
    |||||||||||||||||  ||||  |||||||| |||||| ||||  | ||||||| | | |||||| |||||||| ||||||||||||    
T  37058085 aatacttgcactaatttttcttttgatataaactgtcatgttatctgtcagaaacctcccctcccatcttgtttctcaacctagtcttg 37058173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 15667189 - 15667353
Alignment:
Q  24 aactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttga 123  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  15667189 aactcagaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaacctagtcttga 15667288  T
Q  124 taatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataagg 188  Q
    ||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||||||    
T  15667289 taatcttcattgctgaaaaggatctctcagttgtggatgtagaacctggaagagtcatgataagg 15667353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 97291 - 97132
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||  ||||||||||||||||||||||||||| | |||| ||||   |||| |||||   ||||| |||||||| ||| | | ||||||||| ||    
T  97291 aactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtttctcaacttggacttgataatttt 97192  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    ||||||||||||| |||| || |||||||| |||||||||||||||||||| ||||||||    
T  97191 cattgctgaaaaatatctttctgttgtggctgtagaaactggaagagtcataataaggcg 97132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 10895129 - 10895257
Alignment:
Q  41 tgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatcttcattgctgaa 140  Q
    ||||||||||||||||||||||||||| | |||  || |   || |||||||  |||||| |||||||| ||| ||| ||||||||| ||||||||||||    
T  10895129 tgcactaatttccctttcaatataaactgacatactaactgctaaaaacccaagtcccatcttgtttctcaacttagacttgataattttcattgctgaa 10895228  T
Q  141 aaagatctctcagttgtggccgtagaaac 169  Q
    |||||||| ||  ||||||| ||||||||    
T  10895229 aaagatctttcgattgtggctgtagaaac 10895257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 33694407 - 33694247
Alignment:
Q  29 ataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatc 128  Q
    |||| |||||||| |||||| ||  | ||||||||||||  ||||| ||||| |||||||| ||| ||||||  | ||| | |||||| | |||||||||    
T  33694407 ataagtaatactttcactaacttttccttcaatataaactttcatgttatcaattagaaactcacctcccatcatatttatcaacctaatgttgataatc 33694308  T
Q  129 ttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggc 189  Q
     ||||||||||||| ||||| |||||||||    |||||||| |||||||||| |||||||    
T  33694307 ctcattgctgaaaatgatctatcagttgtgaatatagaaactagaagagtcattataaggc 33694247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 27156563 - 27156724
Alignment:
Q  25 actcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgat 124  Q
    ||||| ||||||||| |||| |||||||||||| ||| ||||| | |||| ||||   ||||||||||  |||||| |||||||| ||| ||| ||| ||    
T  27156563 actcagaactaatacatgcattaatttccctttaaatgtaaactgacatgttatctgctagaaacccaggtcccatcttgtttctcaacttaggcttaat 27156662  T
Q  125 aatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataa 186  Q
    ||| ||||||||| |||||||||| ||| |||| ||  || ||||  |||||||||| ||||    
T  27156663 aattttcattgctaaaaaagatctttcatttgtagctataaaaacatgaagagtcataataa 27156724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 20256447 - 20256618
Alignment:
Q  11 atcatcaatgaccaactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttctt 110  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||             
T  20256447 atcatcaataactaactcaaaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatttaaaaactcacttcccatt--------- 20256537  T
Q  111 aacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcggagta 195  Q
         ||||||||||||||||| ||||||||||||||||||| |  ||| ||||||||||  || |||||||||||||| |||||    
T  20256538 ----cagtcttgataatcttcactgctgaaaaagatctctcaataatggtcgtagaaactaaaaaagtcatgataaggccgagta 20256618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 27133062 - 27132906
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    |||||| || ||| ||||||||||||||||||||||| | |||  ||||   ||||||||||  |||||| |||||||| ||| ||| ||||||||| ||    
T  27133062 aactaaaacatgcgctaatttccctttcaatataaactggcatactatctgctagaaacccaagtcccatcttgtttctcaacttagacttgataatttt 27132963  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataag 187  Q
    |||||| ||||||||||| ||||||||| | ||||||||  |||||||||| |||||    
T  27132962 cattgccgaaaaagatctttcagttgtgtctgtagaaaccagaagagtcataataag 27132906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 44316141 - 44316220
Alignment:
Q  37 tacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaaccta 116  Q
    |||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  44316141 tacttgcactaattcccctttcaatatatacggtcatgttatcatttagaaacccacttcccatcttgtttctcaaccta 44316220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 51065115 - 51065270
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||| ||||||||||||||||||||||||||| | | || ||||    |||||| ||  |||||| || | ||| ||| ||  ||| ||||| ||    
T  51065115 aactaatacatgcactaatttccctttcaatataaactgacttgttatctgccagaaactcagatcccatcttttctctcaacttatacttaataatttt 51065214  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataag 187  Q
    |||||||| ||||||||| ||| ||||||| ||| |||| ||||||||||| |||||    
T  51065215 cattgctg-aaaagatctttcaattgtggctgtaaaaacaggaagagtcataataag 51065270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 11052607 - 11052745
Alignment:
Q  31 aactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttgataatctt 130  Q
    ||||||||| ||||||||||| |||||||| |||||  | |||| |||   | |||||| ||  || ||| |||||||| ||| ||| |||||||||  |    
T  11052607 aactaatacatgcactaattttcctttcaacataaattgacatgttatttgtgagaaactcaggtctcatcttgtttctcaacttagacttgataattct 11052706  T
Q  131 cattgctgaaaaagatctctcagttgtggccgtagaaac 169  Q
      |||||||||||||||| || |||||||||||||||||    
T  11052707 tgttgctgaaaaagatctttccgttgtggccgtagaaac 11052745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 25537219 - 25537053
Alignment:
Q  24 aactcataactaatacttgcactaatttccctttcaatataaaccgtcatggtatcatttagaaacccacttcccattttgtttcttaacctagtcttga 123  Q
    |||||| || |||||| ||||||||||| | ||||||||||||  |||||| |||    ||||||| ||  |||||| || ||||| ||| ||   ||||    
T  25537219 aactcaaaattaatacatgcactaattttcttttcaatataaattgtcatgctatttgctagaaactcaggtcccatcttatttctcaacttaaatttga 25537120  T
Q  124 taatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcatgataaggcg 190  Q
    |||| |||||| | ||||||||||| | | ||||| | || ||||  ||||||||||| ||||||||    
T  25537119 taattttcattaccgaaaaagatcttttaattgtgactgtggaaataggaagagtcataataaggcg 25537053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 6430701 - 6430782
Alignment:
Q  212 tatcttacgattcattataagattcgatccatgatttggaaaatagttcttccggttcacgttatgaatctcgaattgataa 293  Q
    ||||||| ||||||| |||||||| ||| ||| ||||||||||||| ||||  | |||||  | |||||||||| |||||||    
T  6430701 tatcttatgattcataataagatttgattcatcatttggaaaataggtcttttgattcacaatttgaatctcgatttgataa 6430782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 21973971 - 21974000
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  21973971 tagtcttgataatcttcattgctgaaaaag 21974000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 52182069 - 52181978
Alignment:
Q  103 tgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcag---ttgtggccgtagaaactggaagagtcatgataaggcgg 191  Q
    ||||||| ||||||||||| ||||| | ||||| || ||||||| ||||||   | ||||  ||| |||||| |||||||||||||||||||    
T  52182069 tgtttctcaacctagtcttcataatttccattgttggaaaagatatctcagacttcgtggtagtaaaaactgcaagagtcatgataaggcgg 52181978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 42264 - 42181
Alignment:
Q  97 ccattttgtttcttaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggccgtagaaactggaagagtcat 181  Q
    |||| |||||||| ||| |||  |||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  42264 ccatcttgtttctcaacttagatttgataattttcattgctgaaaa-gatctttcagttgtggctgtagaaaccggaagagtcat 42181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 12024 - 12070
Alignment:
Q  102 ttgtttcttaacctagtcttgataatcttcattgctgaaaaagatct 148  Q
    |||||||| ||| ||| ||||||||| ||||||||||||||||||||    
T  12024 ttgtttctcaacttagacttgataattttcattgctgaaaaagatct 12070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 15806 - 15777
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  15806 tagtcttgataatcttcattgctgaaaaag 15777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 135037 - 135066
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  135037 tagtcttgataatcttcattgctgaaaaag 135066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 197097 - 197068
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaag 144  Q
    ||||||||||||||||||||||||||||||    
T  197097 tagtcttgataatcttcattgctgaaaaag 197068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 259910 - 259882
Alignment:
Q  115 tagtcttgataatcttcattgctgaaaaa 143  Q
    |||||||||||||||||||||||||||||    
T  259910 tagtcttgataatcttcattgctgaaaaa 259882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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