View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_high_50 (Length: 212)
Name: NF14565_high_50
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 24838148 - 24837976
Alignment:
| Q |
20 |
tagagaccttaaagggaatctgtttctgccaaattaagtctaaaatagcttacacaccatgagggtcctgaacagtgagcaaattatacgcacccctcac |
119 |
Q |
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| T |
24838148 |
tagagaccttaaagggaacctgtttttgtcaaattaaatctaaaatagcttaaacaccatgagagtcatgaatagtgagcaaattatagacacccctcac |
24838049 |
T |
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| Q |
120 |
ggatttaacactcatcacctcaaaatgaaaaactaattattacttttaattgattatatttatattcttctcc |
192 |
Q |
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| T |
24838048 |
ggagttaacactcatcaccttaaaatggaaaactaattattacttttaattgattatatttttattcttctcc |
24837976 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 15143644 - 15143717
Alignment:
| Q |
39 |
ctgtttctgccaaattaagtctaaaatagcttacacaccatgagggtcctgaacagtgagcaaattatacgcac |
112 |
Q |
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|||||| |||||||| |||||| || |||||| ||||||||||| ||| | | ||| |||||||||||||||| |
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| T |
15143644 |
ctgtttgtgccaaatgaagtctgaagtagcttccacaccatgagagtcattattagtaagcaaattatacgcac |
15143717 |
T |
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