View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_high_6 (Length: 567)
Name: NF14565_high_6
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 7298702 - 7298150
Alignment:
| Q |
1 |
ttcaatttttagtgatcacgatatcattataacatcacatctatatatgtgttagttgtttgacctatcattaagcacacaagaacactccatcaaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298702 |
ttcaatttttagtgatcacgatatcattataacatcacatctatatatgtgttagttgtttgacctatcattaagcacacaagaacactccatcaaaaga |
7298603 |
T |
|
| Q |
101 |
cttagaaaggaaaaactaaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgcaaaaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298602 |
cttagaaaggaaaaactaaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgcaaaaaact |
7298503 |
T |
|
| Q |
201 |
catttcatcaggtattagnnnnnnnnnnnnn-gtttaacaacaaattttatttaaaaactcaatccctactcaggacgaatagtacaaactaaaacataa |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298502 |
catttcatcaggtattagttttttttttttttgtttaacaacaaattttatttaaaaactcaatccctactcaggacgaatagtacaaactaaaacataa |
7298403 |
T |
|
| Q |
300 |
gatgttagttaattagttaatgcctatggttaatttaaaatgagtaattttgttatcatttgaatccataccatgaaagattagttatgaaaaattaaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298402 |
gatgttagttaattagttaatgcctatggttaatttaaaatgagtaattttgttatcatttgaatccataccatgaaagattagttatgaaaaattaaaa |
7298303 |
T |
|
| Q |
400 |
actatttttaagtgattttaaatattttctttattatgttgttgtagggaaatgcagtttctttgacaaagccaataagagatgaagccataacaagcct |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298302 |
actatttttaagtgattttaaatattttctttattatgttgttgtagggaaatgcagtttctttgacaaagccaataagagatgaagccataacaagcct |
7298203 |
T |
|
| Q |
500 |
ctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttctt |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298202 |
ctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttctt |
7298150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 7296271 - 7296183
Alignment:
| Q |
117 |
taaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgcaaaaaactcattt |
205 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| || ||||||||||||||||||| ||||| ||||||| |||||||| ||||||||| |
|
|
| T |
7296271 |
taaagctaaaagaagcaagaatggacgtggggaagatagtgcacatgaatggaggcgatgggaaaacaagttatgcaaacaactcattt |
7296183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 7293809 - 7293675
Alignment:
| Q |
418 |
taaatattttctttattatgttgttgtagggaaatgcagtttctttgacaaagccaataagagatgaagccataacaagcctctactccaaaacactttt |
517 |
Q |
| |
|
|||| ||||||||| |||||| || |||||||| | | ||||||| ||||| | |||||||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
7293809 |
taaacattttcttt-ttatgtcattatagggaaagggaatttctttaacaaaacatataagagaggaagccataactagcctctactccagcacacttcc |
7293711 |
T |
|
| Q |
518 |
caaaagccttgcaattgcagatttaggttgttcttg |
553 |
Q |
| |
|
|| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
7293710 |
cagaagccttgcaattgcagatctgggttgttcttg |
7293675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 32710171 - 32710126
Alignment:
| Q |
156 |
tgcacatgaatggaggtgatggagaaacaagctatgcaaaaaactc |
201 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
32710171 |
tgcacatgaatggaggtgttggagaagcaagctatgcaaacaactc |
32710126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 28377947 - 28377903
Alignment:
| Q |
233 |
tttaacaacaaattttatttaaaaactcaatccctactcaggacg |
277 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
28377947 |
tttaacaacaaattttatttaaaaaccaaatccctactcaagacg |
28377903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 54745385 - 54745428
Alignment:
| Q |
158 |
cacatgaatggaggtgatggagaaacaagctatgcaaaaaactc |
201 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
54745385 |
cacatgaatggaggtgagggagatacaagctatgcaaataactc |
54745428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University