View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_high_7 (Length: 518)

Name: NF14565_high_7
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_high_7
NF14565_high_7
[»] chr1 (9 HSPs)
chr1 (122-501)||(44004750-44005129)
chr1 (136-457)||(43986172-43986493)
chr1 (138-227)||(43993636-43993725)
chr1 (137-341)||(43908253-43908463)
chr1 (131-198)||(19567332-19567399)
chr1 (138-186)||(43917823-43917871)
chr1 (138-182)||(43983365-43983409)
chr1 (124-198)||(23682367-23682441)
chr1 (136-185)||(43990954-43991003)
[»] chr4 (5 HSPs)
chr4 (123-237)||(45088954-45089068)
chr4 (119-199)||(44668633-44668713)
chr4 (119-199)||(44687909-44687989)
chr4 (140-185)||(45095432-45095477)
chr4 (59-100)||(45088872-45088913)
[»] chr2 (1 HSPs)
chr2 (123-198)||(24002338-24002413)
[»] chr7 (2 HSPs)
chr7 (136-199)||(41688793-41688856)
chr7 (159-236)||(41681512-41681589)
[»] chr8 (4 HSPs)
chr8 (136-194)||(42700074-42700132)
chr8 (136-236)||(42694348-42694454)
chr8 (408-457)||(42694115-42694164)
chr8 (123-195)||(24041718-24041790)
[»] chr5 (1 HSPs)
chr5 (136-183)||(8837784-8837831)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 122 - 501
Target Start/End: Original strand, 44004750 - 44005129
Alignment:
Q  122 ctgagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttttataatcaaaactcacacaaagg 221  Q
    |||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactctttcatcatccacacagtccaatgagttttataatcaaaactcacacaaagg 44004849  T
Q  222 cagtcactcaaaacactcaagtgagtactgcgaacattgtcagcatcatcatgtcggggcagcaacacttctccataaatttccttctcaagatcaatgg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44004850 cagtcactcaaaacactcaagtgagtactgcgaacattgtcagcatcatcatgtcggggcagcaacacttctccataaatttccttctcaagatcaatgg 44004949  T
Q  322 aaataagcacatattcattatctttattacctatccaattcaaagtgccactcaaatatatacctaattgactgttaagataacaagggaaatttggaaa 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44004950 aaataagcacatattcattatctttattacctatccaattcaaagtgccactcaaatatatacctaattgactgttaagataacaagggaaatttggaaa 44005049  T
Q  422 agtattccaaatattttcaccaaatgtataaattcttgcagttttctcatactcatgtagcacaaacactagcaccttgt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005050 agtattccaaatattttcaccaaatgtataaattcttgcagttttctcatactcatgtagcacaaacactagcaccttgt 44005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 136 - 457
Target Start/End: Original strand, 43986172 - 43986493
Alignment:
Q  136 tcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttttataatcaaaactcacacaaaggcagtcactcaaaac 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | |||||||| || |||||||||||||||||||||    
T  43986172 tcaatttagtccatgactcaacaactccatactctttcatcctccacacagtccaatgagtttccttatcaaaacacatacaaaggcagtcactcaaaac 43986271  T
Q  236 actcaagtgagtactgcgaacattgtcagcatcatcatgtcggggcagcaacacttctccataaatttccttctcaagatcaatggaaataagcacatat 335  Q
    |  ||| | | |||||||| |||||||||||||||||||| | || |||||||||||||||  ||||||||||||||||||||||||||||| ||  |      
T  43986272 atacaactcactactgcgagcattgtcagcatcatcatgttgaggtagcaacacttctccacgaatttccttctcaagatcaatggaaataatcatctcc 43986371  T
Q  336 tcattatctttattacctatccaattcaaagtgccactcaaatatatacctaattgactgttaagataacaagggaaatttggaaaagtattccaaatat 435  Q
    | ||||| ||||||||||| |||||||||||||||||||| |||||||||||| | ||||| | ||| ||| ||||||||||||| |||  | |||  ||    
T  43986372 ttattatttttattacctacccaattcaaagtgccactcacatatatacctaaattactgtgaggatcacacgggaaatttggaacagttgtgcaagaat 43986471  T
Q  436 tttcaccaaatgtataaattct 457  Q
    |||||||||| ||||| |||||    
T  43986472 tttcaccaaaggtatatattct 43986493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 43993636 - 43993725
Alignment:
Q  138 aatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttttataatcaaaactcacacaaaggcagtca 227  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  43993636 aatttagtccatgactcaaaaactccatactatttcatcatccacatagtccaatgagttttataatcgaaactcacacaaaggcagtca 43993725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 137 - 341
Target Start/End: Complemental strand, 43908463 - 43908253
Alignment:
Q  137 caatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagtttt------ataatcaaaactcacacaaaggcagtcactc 230  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||||| |||       || |||||||| |||| ||||||||| ||||    
T  43908463 caatttagtccatgacttagcaactccatactctttcatcatccatacaatccaatgactttccttagaatgatcaaaacacacagaaaggcagttactc 43908364  T
Q  231 aaaacactcaagtgagtactgcgaacattgtcagcatcatcatgtcggggcagcaacacttctccataaatttccttctcaagatcaatggaaataagca 330  Q
    || ||| ||||   || |  ||| ||||||| ||||||||||||| | || ||||||||||| || ||| |||| |||||||||||||||||||||| ||    
T  43908363 aacacattcaatccagaatagcgtacattgtgagcatcatcatgttgaggtagcaacacttccccgtaattttctttctcaagatcaatggaaataatca 43908264  T
Q  331 catattcatta 341  Q
    || ||| ||||    
T  43908263 cacattgatta 43908253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 19567332 - 19567399
Alignment:
Q  131 gattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttt 198  Q
    |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||    
T  19567332 gattgtcaatatagtccatgactcagcaactccatactctttcattatccacacagccaaatgagttt 19567399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 43917871 - 43917823
Alignment:
Q  138 aatttagtccatgactcaacaactccatactctttcatcatccacacag 186  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  43917871 aatttagtccatgactcaaaaactccacactctttcatcatccacacag 43917823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 43983365 - 43983409
Alignment:
Q  138 aatttagtccatgactcaacaactccatactctttcatcatccac 182  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  43983365 aatttagtccatgactcaacaactccatactctttcatcaaccac 43983409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 23682441 - 23682367
Alignment:
Q  124 gagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttt 198  Q
    |||||| ||| ||||||  ||||||||||||| ||||||||||||||||||| |||||||| | | |||||||||    
T  23682441 gagggatgatcgtcaatacagtccatgactcagcaactccatactctttcattatccacacggccaaatgagttt 23682367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 43990954 - 43991003
Alignment:
Q  136 tcaatttagtccatgactcaacaactccatactctttcatcatccacaca 185  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  43990954 tcaatttagtccatgactcaataatgccatactctttcatcatccacaca 43991003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 45088954 - 45089068
Alignment:
Q  123 tgagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttttataatcaaaactcacacaaaggc 222  Q
    ||||||| |||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||  |||||||||||| | ||||| |  |||||||| ||    
T  45088954 tgagggatgattatcaatttagcccacgactcaataactccatactctttcatcatccacacaacccaatgagttttttgatcaacagacacacaaatgc 45089053  T
Q  223 agtcactcaaaacac 237  Q
    ||| |||||||||||    
T  45089054 agttactcaaaacac 45089068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 44668633 - 44668713
Alignment:
Q  119 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagtttt 199  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  44668633 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagtttt 44668713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 44687909 - 44687989
Alignment:
Q  119 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagtttt 199  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  44687909 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagtttt 44687989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 45095432 - 45095477
Alignment:
Q  140 tttagtccatgactcaacaactccatactctttcatcatccacaca 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactctttcatcatccacaca 45095477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 45088872 - 45088913
Alignment:
Q  59 tctcagcagaaggacaccgttttctgaaatgaacaaggcatc 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  45088872 tctcagcagaagaacaccgttttcagaaatgaacaaggcatc 45088913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 24002413 - 24002338
Alignment:
Q  123 tgagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagttt 198  Q
    ||||||| |||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||  |||||||||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtactttttcatcatccacacaacccaatgagttt 24002338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 41688793 - 41688856
Alignment:
Q  136 tcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagtttt 199  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||  ||  ||||||||||||    
T  41688793 tcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 41688856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 41681512 - 41681589
Alignment:
Q  159 actccatactctttcatcatccacacagtccaatgagttttataatcaaaactcacacaaaggcagtcactcaaaaca 236  Q
    ||||||||||||||||||| |||||||  ||||||||| || |    ||||| |||||||||||  ||||||||||||    
T  41681512 actccatactctttcatcaaccacacaacccaatgagtcttgttcaaaaaacacacacaaaggcgatcactcaaaaca 41681589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 42700132 - 42700074
Alignment:
Q  136 tcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatga 194  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||| | |||||||    
T  42700132 tcaatttagtccatgactcagcaactccatattgtttcatcatccacacggcccaatga 42700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 42694454 - 42694348
Alignment:
Q  136 tcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgagtttta------taatcaaaactcacacaaaggcagtcact 229  Q
    ||||||||||||||||||||  ||||||||| |  ||||||||||| |||  ||||||| |||||      | ||||||||  ||||||||||||| |||    
T  42694454 tcaatttagtccatgactcagtaactccatattgattcatcatccatacaccccaatgatttttattcgagtgatcaaaacaaacacaaaggcagttact 42694355  T
Q  230 caaaaca 236  Q
    |||||||    
T  42694354 caaaaca 42694348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 42694164 - 42694115
Alignment:
Q  408 gggaaatttggaaaagtattccaaatattttcaccaaatgtataaattct 457  Q
    ||||||||||||| ||| ||||||  |||||||||||| |||||||||||    
T  42694164 gggaaatttggaacagttttccaagaattttcaccaaaggtataaattct 42694115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 24041718 - 24041790
Alignment:
Q  123 tgagggaagattgtcaatttagtccatgactcaacaactccatactctttcatcatccacacagtccaatgag 195  Q
    ||||||| |||| ||| ||| ||||||||||||||||| |  | || ||||||||||||||||  ||||||||    
T  24041718 tgagggatgattttcagttttgtccatgactcaacaacgctgttctttttcatcatccacacaacccaatgag 24041790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 8837784 - 8837831
Alignment:
Q  136 tcaatttagtccatgactcaacaactccatactctttcatcatccaca 183  Q
    ||||||| |||||||||||  |||||||||||| ||||||||||||||    
T  8837784 tcaattttgtccatgactcggcaactccatactttttcatcatccaca 8837831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University