View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_1 (Length: 805)
Name: NF14565_low_1
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 670; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 16 - 790
Target Start/End: Original strand, 40085285 - 40086078
Alignment:
| Q |
16 |
ggattgacttatttgactttatctactgacataatctctccaagatagataatcaaacatattaactatatgaaaacaatatgactctaaaatcttttgt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085285 |
ggattgacttatttgagtttatctactgacataatctctccaagatagataatgaaacatattaactatatgaaaacaatatgactctaaaatcttttgt |
40085384 |
T |
|
| Q |
116 |
aaatagaataagcactta-----------------attaagtattttatccaaacatgatcttgatctactataagctaagaaaggctatcttaattcat |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40085385 |
aaatagaataagcacttatatgttataagcacttaattaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcat |
40085484 |
T |
|
| Q |
199 |
tgaaatgaaatggatttt-gcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccg |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085485 |
tgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccg |
40085584 |
T |
|
| Q |
298 |
gattggtccatatgtttgttctgaatggaactatgggtaatgtttggtaatttatgtgtattatatttcgggggtgttcatgtctaattgagggctttaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40085585 |
gattggtccatatgtttgttctgaatggaactatgggtaaagtttggtaatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaa |
40085684 |
T |
|
| Q |
398 |
cttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggcaagttaaccttcagtccagt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40085685 |
cttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggtaagttaaccttcagtccagt |
40085784 |
T |
|
| Q |
498 |
gcttcatgcttttttccttggactgagttcacttgacagtaaactttgtcttcaggctgaaatgaagcgattcaccactaagattgtcgacctcatgaag |
597 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085785 |
gcttcatgcttttgtccttggactgagttcacttgacaggaaactttgtcttcaggttgaaatgaagcgattcaccactaagattgtcgacctcatgaag |
40085884 |
T |
|
| Q |
598 |
caagagaaactgtatacatcacaaggcggacctataattttatctcagg-ttttttatcatgaaatacaatacaagtatagttaatatattcttgaagat |
696 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085885 |
caagagaaactgtatgcatcacaaggaggacctataattttatctcaggtttttttatcatgaaatacaatacaagtatagttaatatattcttgaagat |
40085984 |
T |
|
| Q |
697 |
attaaggtcaaagtttatatttgtcaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatg |
790 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40085985 |
attaaggtcaaagtttatatttgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatg |
40086078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 178 - 776
Target Start/End: Original strand, 40077659 - 40078268
Alignment:
| Q |
178 |
agaaaggctatcttaattcattgaaatgaaatggatttt-gcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggc |
276 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| |
|
|
| T |
40077659 |
agaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggc |
40077758 |
T |
|
| Q |
277 |
aggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaatgtttggtaatttatgtgtattatatttcgggggtgttc |
376 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||| ||||||| ||| |||||||||| |||| | ||||||| |
|
|
| T |
40077759 |
aggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcctttctgtgtattatttttctgtggtgttc |
40077858 |
T |
|
| Q |
377 |
atgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaagg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40077859 |
atgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaagg |
40077958 |
T |
|
| Q |
477 |
caagttaaccttcagtccagtgcttcatgcttttttccttgga-ctgagttcacttgacagtaaactttgtcttcaggctgaaatgaagcgattcaccac |
575 |
Q |
| |
|
| | ||||||||| | |||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
40077959 |
taggctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccgaaatgaagcgattcaccgc |
40078058 |
T |
|
| Q |
576 |
taagattgtcgacctcatgaagcaagagaaactgtatacatcacaaggcggacctataattttatctcaggttttttatcatgaaataca-------ata |
668 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
40078059 |
taagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcaggtttttaatcattaaatacatggtcttttt |
40078158 |
T |
|
| Q |
669 |
caag--tatagttaatatattcttgaagatattaaggtcaaagtttatatttgtcaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagt |
766 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||||||||| || | |||||||| ||||||||||| |||||| ||||||||| ||||| |||||||||| |
|
|
| T |
40078159 |
gaagtatatagttaatatatttttgtagatattaaggtcagagctcatatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagt |
40078258 |
T |
|
| Q |
767 |
atggagacat |
776 |
Q |
| |
|
||||| |||| |
|
|
| T |
40078259 |
atggaaacat |
40078268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 130 - 790
Target Start/End: Original strand, 40059529 - 40060190
Alignment:
| Q |
130 |
cttaattaagtattttatccaaacatgatcttgatctactataagctaagaaaggctatcttaattcattgaaatgaaatggatttt-gcagtatgattt |
228 |
Q |
| |
|
|||||| ||||| |||||||||||||| | |||||||||| |||| | |||||| |||| ||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
40059529 |
cttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattt |
40059628 |
T |
|
| Q |
229 |
tgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaac |
328 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
40059629 |
tgatgggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaac |
40059728 |
T |
|
| Q |
329 |
tatgggtaa----tgtttggtaatttatgtgtattatatttcgggggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttgg |
424 |
Q |
| |
|
||||||||| || |||||||||||||||| ||| |||| |||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40059729 |
tatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctttaacttcttaacagtggtttccctctttgg |
40059826 |
T |
|
| Q |
425 |
cttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggca-agttaaccttcagtccagtgcttcatgcttttttccttgga-ctg |
522 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||| | || ||||| | | || |||||| | ||||| ||||| | ||| |
|
|
| T |
40059827 |
cttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctg |
40059926 |
T |
|
| Q |
523 |
agttcacttgacagtaaactttgtcttcaggctgaaatgaagcgattcaccactaagattgtcgacctcatgaagcaagagaaactgtatacatcacaag |
622 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
40059927 |
agttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaag |
40060026 |
T |
|
| Q |
623 |
gcggacctataattttatctcagg-ttttttatcatgaaatacaatacaagtatagttaatatattcttgaag--atattaaggtcaaagtttatatttg |
719 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||| ||||||||| ||||| | |||||| ||| || ||||||||||||||||| ||||||| |
|
|
| T |
40060027 |
gaggacctataattttatctcaggtttttttatcactaaatacaat-----tatagcgagtatatttttgtagacatattaaggtcaaagttaatatttg |
40060121 |
T |
|
| Q |
720 |
tcaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatg |
790 |
Q |
| |
|
| ||||||||||| |||||| |||| || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40060122 |
ttaatgtgagagtatttgtg--ctctattgccagattgaaaatgagtatggagacatcgattcagcctatg |
40060190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 40059385 - 40059469
Alignment:
| Q |
16 |
ggattgacttatttgactttatctactgacataatctctccaagatagataatcaaacatattaactatatgaaaacaatatgact |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||| |
|
|
| T |
40059385 |
ggattgacttatttgagtttatctactgacataatctctccaagatagataatgaaa-ataataattatatgaaaacaatatgact |
40059469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 35052764 - 35052648
Alignment:
| Q |
374 |
ttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccattta |
473 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
35052764 |
ttcatttctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccattta |
35052665 |
T |
|
| Q |
474 |
aggcaagttaaccttca |
490 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
35052664 |
aggtaaggtaaccttca |
35052648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 368 - 516
Target Start/End: Complemental strand, 12735570 - 12735421
Alignment:
| Q |
368 |
ggggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaac |
467 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
12735570 |
ggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatagacaatgaac |
12735471 |
T |
|
| Q |
468 |
catttaaggcaagttaaccttcagtccag-tgcttcatgcttttttcctt |
516 |
Q |
| |
|
||||||||| || ||||||||| ||| | ||| |||||||||| ||||| |
|
|
| T |
12735470 |
catttaaggtaatgtaaccttcactcccgctgcctcatgcttttgtcctt |
12735421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 368 - 516
Target Start/End: Complemental strand, 12798397 - 12798248
Alignment:
| Q |
368 |
ggggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaac |
467 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
12798397 |
ggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatagacaatgaac |
12798298 |
T |
|
| Q |
468 |
catttaaggcaagttaaccttcagtccag-tgcttcatgcttttttcctt |
516 |
Q |
| |
|
||||||||| || ||||||||| ||| | ||| |||||||||| ||||| |
|
|
| T |
12798297 |
catttaaggtaatgtaaccttcactcccgctgcctcatgcttttgtcctt |
12798248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 358 - 490
Target Start/End: Original strand, 53322734 - 53322866
Alignment:
| Q |
358 |
ttatatttcgggggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaact |
457 |
Q |
| |
|
|||| |||| ||||| ||||| |||||||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
53322734 |
ttatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatc |
53322833 |
T |
|
| Q |
458 |
gacaatgaaccatttaaggcaagttaaccttca |
490 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |
|
|
| T |
53322834 |
gacaatgaaccatttaaggtaaggtaaccttca |
53322866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 29114570 - 29114538
Alignment:
| Q |
17 |
gattgacttatttgactttatctactgacataa |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
29114570 |
gattgacttatttgactttatctactgacataa |
29114538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 25447169 - 25447202
Alignment:
| Q |
16 |
ggattgacttatttgactttatctactgacataa |
49 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
25447169 |
ggattgacttatttgagtttatctactgacataa |
25447202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 26911737 - 26911704
Alignment:
| Q |
16 |
ggattgacttatttgactttatctactgacataa |
49 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
26911737 |
ggattgacttatttgagtttatctactgacataa |
26911704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 33405116 - 33405149
Alignment:
| Q |
16 |
ggattgacttatttgactttatctactgacataa |
49 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
33405116 |
ggattgacttatttgagtttatctactgacataa |
33405149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 648
Target Start/End: Complemental strand, 22015666 - 22015577
Alignment:
| Q |
559 |
atgaagcgattcaccactaagattgtcgacctcatgaagcaagagaaactgtatacatcacaaggcggacctataattttatctcaggtt |
648 |
Q |
| |
|
|||||||| || ||| ||||||||||||| | |||||||||||||| || ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
22015666 |
atgaagcggtttaccgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcaggtt |
22015577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 22015910 - 22015826
Alignment:
| Q |
253 |
atttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaa |
337 |
Q |
| |
|
||||||||| |||||||| | |||||| ||||||||||||||||||| ||||||||||| ||| |||||||||| || |||||| |
|
|
| T |
22015910 |
atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaa |
22015826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 22015743 - 22015670
Alignment:
| Q |
405 |
acagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggca |
478 |
Q |
| |
|
||||||||||||| |||||| | || || ||| | || ||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
22015743 |
acagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggca |
22015670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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