View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_10 (Length: 495)
Name: NF14565_low_10
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 14788221 - 14788688
Alignment:
| Q |
18 |
atacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcatggaatattagtgtatcaaannnnnnnnnnnagtatctaggttgtat |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
14788221 |
atacagatgtcagacatgaaaacacgattaattttgaaggtgtccatgcttcattgaatattagtgtatcaaatttttttttt-agtatctaggttgtat |
14788319 |
T |
|
| Q |
118 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttacaccttacaactttagaaattgacatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788320 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttacaccttacaactttagaaattgacatt |
14788419 |
T |
|
| Q |
218 |
ttttacttataatatatcacttatttccatttttaccttcataacaagcacttgttagcatgagtctattttctaatattattctttcattgttgcttca |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14788420 |
ttttacttataatatatcacttatttccttttttaccttcataacaagcacttgttagcatgagtctattttctaatattattttttcattgttgcttca |
14788519 |
T |
|
| Q |
318 |
aataaactttgtccttattggtatacacg-tttttatattaattcacacaacacatctgttgcaataaacattttaaaatggaaacatcattgcctcttg |
416 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788520 |
aataaactttgtccttattggtatacacgttttttatattaattcacacaacacatctgttgcaataaacattttaaaatggaaacatcattgcctcttg |
14788619 |
T |
|
| Q |
417 |
ctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgagttaccttgatgatg |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788620 |
ctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgagttaccttgatgatg |
14788688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 15229258 - 15229430
Alignment:
| Q |
18 |
atacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcatggaatattagtgtatcaaannnnnnnnnnnagtatctaggttgtat |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
15229258 |
atacagatgtcagacatgaaaacacgattaattttgaaggtgtccatgcttcattgaatattagtgtatcaaatttttttttt-agtatctaggttgtat |
15229356 |
T |
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| Q |
118 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttac |
191 |
Q |
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| T |
15229357 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttac |
15229430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 15239383 - 15239555
Alignment:
| Q |
18 |
atacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcatggaatattagtgtatcaaannnnnnnnnnnagtatctaggttgtat |
117 |
Q |
| |
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||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
15239383 |
atacaaatgtcggacatggagacacgattaattttggaggtgtccatgcttcattcaatattaatgtatcaaattttattttt-agtatctaggttgtat |
15239481 |
T |
|
| Q |
118 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttac |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239482 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttac |
15239555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 17544751 - 17544475
Alignment:
| Q |
18 |
atacagatgtcagacatgaagacacgattaattttgaaggtgtccatgcttcatggaatattagtgtatcaaannnnnnnnnnnagtatctaggttgtat |
117 |
Q |
| |
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||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
17544751 |
atacaaatgtcggacatggagacacgattaattttggaggtgtccatgcttcattcaatattaatgtatcaaattttattttt-agtatctaggttgtat |
17544653 |
T |
|
| Q |
118 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttacaccttacaactttagaaattgacatt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544652 |
tttcatgtcgaaactttttaacccatatgatgttttggttaagaagtttacaccttgagaaagatgtattttacaccttacaactttagaaattgacatt |
17544553 |
T |
|
| Q |
218 |
ttttacttataatatatcacttatttccatttttaccttcataacaagcacttgttagcatgagtctattttctaata |
295 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17544552 |
ttttacttataatatatcacttatttccttttttaccttcataacaagcacttgttagcatgagtctatgttctaata |
17544475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 287 - 485
Target Start/End: Complemental strand, 17544057 - 17543859
Alignment:
| Q |
287 |
tttctaatattattctttcattgttgcttcaaataaactttgtccttattggtatacacgtttttatattaattcacacaacacatctgttgcaataaac |
386 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17544057 |
tttctaatattattctttcattgttgcttcaaataaactttgtccttattggtatacacatttttatattaattcacacaacacatctgttgcaataaac |
17543958 |
T |
|
| Q |
387 |
attttaaaatggaaacatcattgcctcttgctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgagttaccttgatgatg |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543957 |
attttaaaatggaaacatcattgcctcttgctagtgatagtttttcatatagttggttatcaaactctaataaatctcatgtgagttaccttgatgatg |
17543859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 9045163 - 9045229
Alignment:
| Q |
199 |
aactttagaaattgacattttttacttataatatatcacttatttccatttttaccttcataacaag |
265 |
Q |
| |
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||||||||||||| || |||||||||| ||| ||||||||||||| |||||||||||| ||||||| |
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|
| T |
9045163 |
aactttagaaattaactttttttactttaaatttatcacttatttctatttttaccttcttaacaag |
9045229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 35507203 - 35507145
Alignment:
| Q |
199 |
aactttagaaattgacattttttacttataatatatcacttatttccatttttaccttc |
257 |
Q |
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|||| ||||||||||| |||||||| | ||| ||||||||||||||||||||| |||| |
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| T |
35507203 |
aactctagaaattgactttttttaccttgaatttatcacttatttccatttttagcttc |
35507145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 47506 - 47458
Alignment:
| Q |
233 |
atcacttatttccatttttaccttcataacaag-cacttgttagcatga |
280 |
Q |
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|||||||| ||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
47506 |
atcacttaattccatttttaacttcttaacaagtcacttgttagcatga |
47458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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