View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_11 (Length: 432)
Name: NF14565_low_11
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 35073346 - 35073743
Alignment:
| Q |
19 |
agctcagcaaagcttcattcatagagacttaaaaccatcaaatatactattaggtgatgacatgagagcaaaggttgcagactttgggctggttaaaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073346 |
agctcagcaaagcttcattcatagagacttaaaaccatcaaatatactattaggtgatgacatgagagcaaaggttgcagactttgggctggttaaaaac |
35073445 |
T |
|
| Q |
119 |
gcaccggacgggaattattctgttgagacaaagttggctggaacatttggatatcttgcacccgagtatgcaggtatacaaagcttttggttttaagcgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
35073446 |
gcaccggacgggaattattctgttgagacaaagttggctggaacatttggatatcttgcacccgagtatgcaggtataaaaaacttttggttttaagcgc |
35073545 |
T |
|
| Q |
219 |
gtgccttaattaattttaaaattgtatctagtacattattttgtgattatagctatagcctataggtactgcatcaatatcatgctctaatgtcgcgaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073546 |
gtgccttaattaattttaaaattgtatctagtacattattttgtgattatagctatagcctataggtactgcatcaatatcatgctctaatgtcgcgaat |
35073645 |
T |
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| Q |
319 |
attttggtagtttgattgagtagctacacaaaaacaaaagttggaaggagnnnnnnntgttatttgatacctgatatgtgtttctgaaactctctgct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
35073646 |
attttggtagtttgattgagtagctacacaaaaacaaaagttggaaggagaaaaaaatgttatttgatacctgatatgtgtttctgaaactctttgct |
35073743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 38160201 - 38160024
Alignment:
| Q |
19 |
agctcagcaaagcttcattcatagagacttaaaaccatcaaatatactattaggtgatgacatgagagcaaaggttgcagactttgggctggttaaaaac |
118 |
Q |
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|
||||||||||||||||||||| || ||||||||||| || || ||||| || ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
38160201 |
agctcagcaaagcttcattcacagggacttaaaaccctccaacatactgttgggtgatgacatgagagcaaaggttgcagattttgggttggttaaaaat |
38160102 |
T |
|
| Q |
119 |
gcaccggacgggaattattctgttgagacaaagttggctggaacatttggatatcttgcacccgagtatgcaggtata |
196 |
Q |
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|||||||| || || ||||| || ||||||| |||||||||||||||||||||| | ||||| ||||||||||||||| |
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| T |
38160101 |
gcaccggatggcaaatattccgtcgagacaaggttggctggaacatttggatatttggcacctgagtatgcaggtata |
38160024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 33056629 - 33056714
Alignment:
| Q |
20 |
gctcagcaaagcttcattcatagagacttaaaaccatcaaatatactattaggtgatgacatgagagcaaaggttgcagactttgg |
105 |
Q |
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||||| ||||||||||| || |||||||| ||||| |||||||| || | || ||||| ||||| |||||||| ||||| ||||| |
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| T |
33056629 |
gctcatcaaagcttcatacacagagacttgaaaccttcaaatattctccttggagatgatatgagggcaaaggtcgcagattttgg |
33056714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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