View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_12 (Length: 431)
Name: NF14565_low_12
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 44681154 - 44680742
Alignment:
| Q |
1 |
ttgaaagtcaatatttgagagactaattcttcttgaggatacaaagatttattaaaggaaattgatttcttttagtaatggacactctttcatacatata |
100 |
Q |
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| T |
44681154 |
ttgaaagtcaatatttgagagactaattcttcttgaggatacaaagatttattaaaggaaattgattttttttagtaatggacactctttcatacatata |
44681055 |
T |
|
| Q |
101 |
taatagtgactaagcatttaatcattgattacacgtgaatttcttatgttcgatttgcctccactaaaatatgtattggatgctaatgatgtgaaaaact |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44681054 |
taatagtgactaagtatttaatcattgattacacgtgaatctcttaggttcgatttgcctccactaaaatatgtattggatgctaatgatgtgaaaaact |
44680955 |
T |
|
| Q |
201 |
aattctttttagaatattttgtatgctttaatgtgatttgcacaagtacattttgacgatagtttacgaaaaaatatttcgtatacatcactatgcatta |
300 |
Q |
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| T |
44680954 |
aattctctttagaatattttgtatgccttaatgtgatttgcacaagtacattttggcgatggtttacgaaaaaatatttcgtacacatcactatgcatta |
44680855 |
T |
|
| Q |
301 |
gagatgaggatgatgattcagagtgagaaaatgggagagaataagctataaaacttgtcaaatttgtgtccaaattcatatggatatataccatggattt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44680854 |
gagatgaggatgatgattcagagtgagaaaatgggagagaataagctataaaatttgtcaaatttgtgtccaaattcatatggatatataccatgtattt |
44680755 |
T |
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| Q |
401 |
ataacatatgata |
413 |
Q |
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| T |
44680754 |
ataacatatgata |
44680742 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 44850493 - 44850564
Alignment:
| Q |
297 |
attagagatgaggatgatgattcagagtgagaaaatgggagagaataag-ctataaaacttgtcaaatttgt |
367 |
Q |
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|||||||| ||||| |||||| | ||| |||||||||||||||||||| |||| ||||||| ||||||||| |
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| T |
44850493 |
attagagaagaggaggatgatctatagtaagaaaatgggagagaataagactatgaaacttgccaaatttgt |
44850564 |
T |
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