View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_13 (Length: 429)
Name: NF14565_low_13
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 46920441 - 46920168
Alignment:
| Q |
6 |
aaatggtgtatgagcgtttatttggattttggtacgaattgcatcagttctcatgcagcgatgttgacttctcatgtttttcaacagatatttattttag |
105 |
Q |
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| T |
46920441 |
aaatggtgtatgagcgtttatttggattttggtacgaattgcatcagttctcatgcagcgatgttgacttctcatgtttttcaacagatat---ttttag |
46920345 |
T |
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| Q |
106 |
taacttnnnnnnnnnnnnnnnnnnnngaggagctaaattgagaaattatgctcttctcgatnnnnnnnttgttcgctcataaccaaacttctaaaaata- |
204 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
46920344 |
taactt---gaagaagaagaagaaaggaggagctaaattgagaaattatgctcttcttgat-aaaaaattgttcgctcctaaccaaacttctaaaaatac |
46920249 |
T |
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| Q |
205 |
cctgcgagacttaagtcacgttgcgtaaactaacttacgctcgttataaaccttgtgtgatttaactcacataggttataa |
285 |
Q |
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| T |
46920248 |
cctgcgagacttaagtcactttgcgtaaattaacatacgctcgttataaaccttgtgtgagttaactcacataggttataa |
46920168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 46919979 - 46919860
Alignment:
| Q |
307 |
tgaacaaagtgtcgcaattgatagaaaattgaaggttgaaacacttacaagtcaaaaatctttatatctaaaagtgtttggtaaagacatattgtcaaat |
406 |
Q |
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| T |
46919979 |
tgaacaaagtgtcgcaattgatagaaaattgaaggttgaaacacttacaagtcaaaaatctttatatctaaaagtgtttggtaaagacatattgtcaaat |
46919880 |
T |
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| Q |
407 |
ggtctttgtgtgattcttct |
426 |
Q |
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| T |
46919879 |
ggtctttgtgtgattgttct |
46919860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 46150501 - 46150397
Alignment:
| Q |
177 |
ttcgctcataaccaaacttctaaaaatacc--tgcgagacttaagtcacgttgcgtaaactaacttacgctcgttataaaccttgtgtgatttaactcac |
274 |
Q |
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||||||| |||||||||| |||||||||| |||| |||||||||||| ||||| | ||||| |||| |||||||| |||| |||| ||||||||| |
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| T |
46150501 |
ttcgctcccaaccaaacttttaaaaataccaatgcgtcacttaagtcacgctgcgtgagttaactcacgcatgttataaatcttgcgtgaattaactcac |
46150402 |
T |
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| Q |
275 |
atagg |
279 |
Q |
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|||| |
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| T |
46150401 |
gtagg |
46150397 |
T |
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