View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_15 (Length: 415)
Name: NF14565_low_15
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_15 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 106 - 415
Target Start/End: Original strand, 7278008 - 7278317
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
7278008 |
acaacacatagacttctctcactctcaccccaatgctccagtacaatcatactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgc |
7278107 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaata |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278108 |
tactgactggtgcatctacaaacaaagaacctaggtccaatatatagtcatggtcctcccattgcttcaccacactaagcgatgtaggacttttccaata |
7278207 |
T |
|
| Q |
306 |
gctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttcagcattcgcttctattgt |
405 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||| |||||||| | |||||||| ||||| |
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|
| T |
7278208 |
gcaaatattttttaacctccttatttatttaagaaacttgacaatcaaacccaacaatctccaccttgattgtacgagtttcatctttcgcttccattgt |
7278307 |
T |
|
| Q |
406 |
ttatactgac |
415 |
Q |
| |
|
|||||||||| |
|
|
| T |
7278308 |
ttatactgac |
7278317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 120 - 360
Target Start/End: Original strand, 392278 - 392521
Alignment:
| Q |
120 |
tctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgca |
219 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |
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|
| T |
392278 |
tctctcactcacaacccaatgccccaatacaaccacactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactaactgatgta |
392377 |
T |
|
| Q |
220 |
tctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttccaatagctaatctttt |
316 |
Q |
| |
|
|||| |||||||||| ||| || |||||||||||| ||||| |||||||||||||| | |||||||||||| |||| | |||||| ||||| |||| |
|
|
| T |
392378 |
tctaaaaacaaagaaactacgttcaatatatagccttggtcttccccttgcttcactaaactaagcgatgtgggacataatcaccaataactaatatttt |
392477 |
T |
|
| Q |
317 |
ttaacctccttatttatttaagaaatttgacaatcaaacccaac |
360 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
392478 |
ctaacctccttctttattcaagaaacttgacaatcaaacccaac |
392521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 106 - 361
Target Start/End: Complemental strand, 3581574 - 3581328
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||| |||||||| | |||||||||||| |||||||| ||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
3581574 |
acaacacatagacttatctcactcaccccccaatgccccgatacaaccacactctcacaaagaaaatatttaaactaag-----------cttaaagtgc |
3581486 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatata--gccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaa |
303 |
Q |
| |
|
|||| ||| |||||| | |||||||||||||| |||||||||||| ||| | | | | ||||||||| ||||||||| | |||| ||||| ||| | |
|
|
| T |
3581485 |
tactcactattgcatcaaaaaacaaagaacctatgtccaatatatatagccttagcctttcccttgcttaaccacactatgaaatgtgagacttctccca |
3581386 |
T |
|
| Q |
304 |
tagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||| |
|
|
| T |
3581385 |
tagctaatattttttaacctccttctttatttaagaaacttgacaatcaaacctaaca |
3581328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 310
Target Start/End: Original strand, 7284560 - 7284764
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |||| | ||| ||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7284560 |
acaacacatagacttctctcattctcaccccaatgccccactacagcatcactctcacaaaacaaatatttaaactaagtcagatataagtttaaagtgg |
7284659 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaag-aacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaat |
304 |
Q |
| |
|
|||||| |||||| |||| |||||||| || |||||||||||| || | | ||| | ||| |||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
7284660 |
tactaattggtgcgtctaaaaacaaagaaatctaggtccaatacat-gatcttgtctttcccatgcttcaccatactaagtgacgtaggacttctccaat |
7284758 |
T |
|
| Q |
305 |
agctaa |
310 |
Q |
| |
|
|||||| |
|
|
| T |
7284759 |
agctaa |
7284764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 106 - 388
Target Start/End: Original strand, 15588610 - 15588892
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
15588610 |
acaacacatagacttctctcactcttaccccaatgccccagtacaaccaaactctcacaaaacaaatatttaaactaagtcaaatataagcttaacgtgc |
15588709 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaata |
305 |
Q |
| |
|
|||| || |||||||||| ||||||||||| || |||||||||||| ||||| ||| |||||||||||| |||||| ||||| |||||| ||||||| |
|
|
| T |
15588710 |
tactgacaggtgcatctaaaaacaaagaacgtaccatcaatatatagccttggtcttcctcttgcttcaccaaactaagtgatgtgggacttctccaata |
15588809 |
T |
|
| Q |
306 |
gctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
||||| |||| |||||||||| |||||| |||||| |||||||||| ||||||||||| ||| | |||| |||||||||||| |
|
|
| T |
15588810 |
actaatattttgtaacctccttctttattcaagaaacttgacaatcatacccaacaatctccaacttgattgtaagagtttca |
15588892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 106 - 361
Target Start/End: Original strand, 5448818 - 5449075
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||||| ||| ||| |||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
5448818 |
acaacacatagacttctatcactctcaccc-aatgccccagtacacccacactctcacaaagaaaatatttaaactaagttagatataagcttaaagtgc |
5448916 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttcca |
302 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||| ||||||||||| |||| |||||||||||||| | |||||||||||| | || | ||| |
|
|
| T |
5448917 |
tactgactggtgcatctaaaaacaaagaaactaggttcaatatatagcattggtattccccttgcttcactaaactaagcgatgtggaacataatcacca |
5449016 |
T |
|
| Q |
303 |
atagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||||||||| |||| |||| ||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
5449017 |
atagctaatattttctaacatccttttttattcaagaaacttgacaatcaaacccaaca |
5449075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 119 - 361
Target Start/End: Original strand, 15589757 - 15590000
Alignment:
| Q |
119 |
ttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgc |
218 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||| || |||||| |||||||| ||||| |||||||| || |||| |
|
|
| T |
15589757 |
ttctctcactctcacgccaattccccagtacaaccatactgacccaaagcaaatattgaacctaagtaagatataagcttaatgtgctactgacctgtgc |
15589856 |
T |
|
| Q |
219 |
atctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggactt-ttccaatagctaatcttttt |
317 |
Q |
| |
|
||||| | ||||||||||||| | |||||||||||| ||||| |||||||||||||||| |||||| || || ||||| | |||||| ||||| ||||| |
|
|
| T |
15589857 |
atctaaatacaaagaacctagattcaatatatagccttggtcttccccttgcttcaccaaactaagtgacgtgtgacttctcccaataactaatattttt |
15589956 |
T |
|
| Q |
318 |
taacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
15589957 |
taacctccttctttattcaagaaatttgacaatcaaaccaaaca |
15590000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 106 - 361
Target Start/End: Original strand, 5439808 - 5440065
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||||| ||| ||| |||||||| ||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
5439808 |
acaacacatagacttctatcactctcaccc-aatgccccagtacatccacactctcacaaagaaaatatttaaactgagttagatataagcttaaagtgc |
5439906 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttcca |
302 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| ||||||||||| |||| |||||||||||||| | |||||||||||| | || | ||| |
|
|
| T |
5439907 |
tactgactggtgcatctaaaaacaaataaactaggttcaatatatagcattggtattccccttgcttcactaaactaagcgatgtggaacataatcacca |
5440006 |
T |
|
| Q |
303 |
atagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||||||||| |||| |||| ||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
5440007 |
atagctaatattttctaacatccttttttattcaagaaacttgacaatcaaacccaaca |
5440065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 5438813 - 5438959
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaat-gccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtg |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
5438813 |
acaacacatagacttctctcactctcaccccaaacgccccagtacacccacactctcacaaaacaaatatttaaactaagttatatataagcttaaagtg |
5438912 |
T |
|
| Q |
205 |
ctactaactggtgcatctacaaacaaagaacctaggtccaatatata |
251 |
Q |
| |
|
||| | ||||||||||||| |||||||||| ||| || ||||||||| |
|
|
| T |
5438913 |
ctattgactggtgcatctaaaaacaaagaaactatgttcaatatata |
5438959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 5447823 - 5447969
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaat-gccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtg |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
5447823 |
acaacacatagacttctctcactctcaccccaaacgccccagtacacccacactctcacaaaacaaatatttaaactaagttatatataagcttaaagtg |
5447922 |
T |
|
| Q |
205 |
ctactaactggtgcatctacaaacaaagaacctaggtccaatatata |
251 |
Q |
| |
|
||| | ||||||||||||| ||||||||| ||| || ||||||||| |
|
|
| T |
5447923 |
ctattgactggtgcatctaagaacaaagaaactatgttcaatatata |
5447969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 411
Target Start/End: Original strand, 5438960 - 5439025
Alignment:
| Q |
346 |
acaatcaaacccaacaatcgccaccatgatcgtaagagtttcagcattcgcttctattgtttatac |
411 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||||| | | |||||| ||||| ||||| |
|
|
| T |
5438960 |
acaatcaaacccaacaatctccaccttgattgtaagagtttcatcttccgcttccattgtctatac |
5439025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 411
Target Start/End: Original strand, 5447970 - 5448035
Alignment:
| Q |
346 |
acaatcaaacccaacaatcgccaccatgatcgtaagagtttcagcattcgcttctattgtttatac |
411 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||||| | | |||||| ||||| ||||| |
|
|
| T |
5447970 |
acaatcaaacccaacaatctccaccttgattgtaagagtttcatcttccgcttccattgtctatac |
5448035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 106 - 362
Target Start/End: Original strand, 35429862 - 35430120
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35429862 |
acaacacatagacttctctaactctcaccc-aatgccccagtacacccacactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgc |
35429960 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttcca |
302 |
Q |
| |
|
|||| |||||||| |||| |||||||||| |||||| |||||||||| | ||||| |||||||||||||| | | |||||||||| |||| | ||| |
|
|
| T |
35429961 |
tactgactggtgcttctaaaaacaaagaaactaggttcaatatatagtcttggtcttccccttgcttcactaaaataagcgatgtcggacataatcacca |
35430060 |
T |
|
| Q |
303 |
atagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaa |
362 |
Q |
| |
|
||| ||||| |||| |||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
35430061 |
ataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaacaa |
35430120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 106 - 405
Target Start/End: Complemental strand, 41341203 - 41340902
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||||| | |||||||| |||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
41341203 |
acaacacatagacttctctaattctcaccc-aatgccccagtacacccacactctcacaaagcaaacatttaaactaagtcagatataagcttaaagtgc |
41341105 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggactt---ttcca |
302 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||| |||||||| | ||||| |||||||||||||| | |||||||||||| |||| | ||| |
|
|
| T |
41341104 |
tactgactggtgcatctaaaaacaaagaaactaggtttaatatataactttggtcttccccttgcttcactaaactaagcgatgtgggacataaccacca |
41341005 |
T |
|
| Q |
303 |
atagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttcagcattcgcttctat |
402 |
Q |
| |
|
||| ||||| |||| |||||||||| |||||| ||||||||||||||| ||||| ||||||| |||| |||| |||||||||||| | | |||||| || |
|
|
| T |
41341004 |
ataactaatattttataacctccttctttattcaagaaatttgacaattaaacctaacaatcttcaccttgattgtaagagtttcatcttccgcttccat |
41340905 |
T |
|
| Q |
403 |
tgt |
405 |
Q |
| |
|
||| |
|
|
| T |
41340904 |
tgt |
41340902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 18009311 - 18009079
Alignment:
| Q |
156 |
actttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaaacaaagaacctaggtccaatatatagcca |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||| || |||||| ||| |||||||||||||||| || |
|
|
| T |
18009311 |
actttcacaaagaaaatatttaaactaagtcaaatataagtttaaagtgctactgactggtgcatttaaaaacaacgaatctaggtccaatatataacct |
18009212 |
T |
|
| Q |
256 |
tggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaac |
355 |
Q |
| |
|
|| || | || ||| ||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
18009211 |
tgatctttccgttgtttcaccacactaagcgacttgggacttctccaatagctaatattttttaacctccttctttatttaagaaacttgacaatcaaac |
18009112 |
T |
|
| Q |
356 |
ccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| |
|
|
| T |
18009111 |
ccaacaattttcaccttgattgtaagagtttca |
18009079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 126 - 359
Target Start/End: Original strand, 7400443 - 7400678
Alignment:
| Q |
126 |
actctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctaca |
225 |
Q |
| |
|
||||||||| |||||||||| ||||| || ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||||| | |
|
|
| T |
7400443 |
actctcacctcaatgccccaatacaatcacactctcacaaaacaaatatttaaactaagtcagatataagcttaaagtgctactgaccggtgcatctaaa |
7400542 |
T |
|
| Q |
226 |
aacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttccaatagctaatcttttttaacc |
322 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||| |||||||||| ||| | |||||||||||| |||| | |||||| ||||| ||||||||| |
|
|
| T |
7400543 |
aacaaagaacctaggttcaatatatagtcttggtcttccccttgctccactaaactaagcgatgtcggacataatcaccaataactaat-atttttaacc |
7400641 |
T |
|
| Q |
323 |
tccttatttatttaagaaatttgacaatcaaacccaa |
359 |
Q |
| |
|
|| || |||||| |||||| ||||||||||||||||| |
|
|
| T |
7400642 |
tctttctttattcaagaaacttgacaatcaaacccaa |
7400678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 126 - 362
Target Start/End: Complemental strand, 7659112 - 7658880
Alignment:
| Q |
126 |
actctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaa--cttaaagtgctactaactggtgcatcta |
223 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
7659112 |
actctcaccctaatgcctcagtacaaccacactttca------aaat-tttaaactaagtcagatatataagcttaaagtgctactaactggtacatctg |
7659020 |
T |
|
| Q |
224 |
caaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaatcttttttaacct |
323 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||| || |||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
7659019 |
aaaacaaagaacctaaattcaatatatagcattggtcttcgtcttgctccaccacactaagcgatgtaggacttctccaataactaatattttttaacct |
7658920 |
T |
|
| Q |
324 |
cc-ttatttatttaagaaatttgacaatcaaacccaacaa |
362 |
Q |
| |
|
|| || |||||||| ||| |||||||||||||||||||| |
|
|
| T |
7658919 |
cctttccttatttaaaaaacttgacaatcaaacccaacaa |
7658880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 106 - 388
Target Start/End: Original strand, 35428279 - 35428564
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| ||| ||| |||||| ||| | ||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35428279 |
acaacacatagacttctctaactctgaccc-aataccctagtacacccacaacctcacaaaacaaatatttaaactaagtcagatataagcttaaagtgc |
35428377 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaa---cctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---tttt |
299 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||| |||||||||||| ||||| |||| ||||||||| | | |||||||| | |||| | |
|
|
| T |
35428378 |
tactgactggtgcatctaaaaacaaagaaattactaggttcaatatatagccttggtcttcccattgcttcactaaaataagcgatttgggacataatca |
35428477 |
T |
|
| Q |
300 |
ccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
|||||| ||||| |||| |||||||||| |||||| | ||| |||||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
35428478 |
ccaataactaatattttctaacctccttctttattca--aaacttgacaatcaaacccaacaatctccaccttgattgtaagagtttca |
35428564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 30921576 - 30921826
Alignment:
| Q |
107 |
caacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgct |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| || |||||||||| || ||||||||||| |||||||||||| | |||||||| |||||||||| |
|
|
| T |
30921576 |
caacacatagacttctctcactctcaccctaatgacctagtacaaccacgctctcacaaagcaattatttaaactaacttagatataagtttaaagtgct |
30921675 |
T |
|
| Q |
207 |
actaactggtgcatctacaaa-caaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaata |
305 |
Q |
| |
|
| | ||| ||||| ||| ||||||||||| |||||||||||| | ||||| |||| ||| || ||||||||||| ||||| |||||| ||||||| |
|
|
| T |
30921676 |
aatgt---gtgtatctaaaaaacaaagaacctacgtccaatatataacattggtcttccctttgttttaccacactaagtgatgtgggacttctccaata |
30921772 |
T |
|
| Q |
306 |
gctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaac |
360 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
30921773 |
tctaat-gtttttaacctccttctttattcaagaaacttgacaatcaaacccaac |
30921826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 13661763 - 13661627
Alignment:
| Q |
226 |
aacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttcca---atagctaatcttttttaacc |
322 |
Q |
| |
|
||||||||||| | || ||||||||| | ||||| |||||||||||||| | |||||||||||| | || | || ||| ||||| |||||||||| |
|
|
| T |
13661763 |
aacaaagaaccaaagttcaatatataacattggtcttccccttgcttcactaaactaagcgatgtggaacataatcactaataactaatattttttaacc |
13661664 |
T |
|
| Q |
323 |
tccttatttatttaagaaatttgacaatcaaacccaa |
359 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
13661663 |
tccttctttattcaagaaacttgacaatcaaacccaa |
13661627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 114 - 361
Target Start/End: Complemental strand, 31322733 - 31322485
Alignment:
| Q |
114 |
tagacttctctcactctcaccccaa-tgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaac |
212 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||| || ||||||| |||||||||||||||||||||||||| |||||||||| | | | |
|
|
| T |
31322733 |
tagacttttctcactctcaccccaaatgccccagcacaaccactctcccacaaagaaaatatttaaactaagtcagatataagcttaaagtgccattgaa |
31322634 |
T |
|
| Q |
213 |
tggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaatc |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| |||| ||||| ||||||| ||||| |
|
|
| T |
31322633 |
tggtgcatctaaaaacaaagaacctaggtccaatatataaccttggtcttcctcttacttcaccacactaagtaatgtgagacttctccaatatctaata |
31322534 |
T |
|
| Q |
313 |
ttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||||| ||||||||| |||| |||||||| |||||||||||||| |||| |
|
|
| T |
31322533 |
tttttaaacctccttctttaattaagaaacttgacaatcaaacctaaca |
31322485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 106 - 356
Target Start/End: Original strand, 41848300 - 41848551
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||| ||| |||||||||||||||| |||||||||| || ||| ||| |
|
|
| T |
41848300 |
acaacacatagacttctctcactctagccccaatgttccagtacaaccacactttcataaaacaaatatttaaactaaatcagatataagctaaaaatgc |
41848399 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatgg-tcctccccttgcttcaccacactaagcgatgtaggacttttccaat |
304 |
Q |
| |
|
|||| |||| |||||||| |||||||||||| | ||| |||||||||| ||| | ||||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
41848400 |
tactgactgatgcatctaaaaacaaagaaccaaagtcgaatatatagcattggtttttccccttgcttcaccacactaagcggtgtttaacttctccaat |
41848499 |
T |
|
| Q |
305 |
agctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacc |
356 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
41848500 |
agctaatattttttaacctccttctttatttaagaaacttaacaatcaaacc |
41848551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 114 - 364
Target Start/End: Complemental strand, 31327359 - 31327108
Alignment:
| Q |
114 |
tagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaact |
213 |
Q |
| |
|
|||||||||||||| ||||||| | | ||| ||||||| || | | ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
31327359 |
tagacttctctcacactcaccctattaccctagtacaatcacaatctcataaaataaatatttaaattaagtcagatataaacttaaagtgctacttact |
31327260 |
T |
|
| Q |
214 |
ggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaat-c |
312 |
Q |
| |
|
|||| || || ||| | ||||||||||| |||||||||| ||||| | || ||||||||||||||||||| ||| |||||| |||||||| |||| |
|
|
| T |
31327259 |
ggtgtatataaaaatagagaacctaggttgaatatatagcattggtctttcctttgcttcaccacactaagcaatgcgggacttctccaataggtaatat |
31327160 |
T |
|
| Q |
313 |
ttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatc |
364 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31327159 |
ttttttaatctccttttttatttaagaaatttgacaatcaaacccaacaatc |
31327108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 106 - 269
Target Start/End: Complemental strand, 14508892 - 14508729
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14508892 |
acaacacatagacttctctcactctcaccccatggccctagtacaaccacactctcacaaagcaaatatttaaactaggtcagatataagcttaaagtgc |
14508793 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttg |
269 |
Q |
| |
|
|||| |||||| |||||| |||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
14508792 |
tactgactggtacatctaaaaactaagaacctaggttcaatatatagccttggtcttccccttg |
14508729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 10549993 - 10550141
Alignment:
| Q |
127 |
ctctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaa |
226 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
10549993 |
ctctcacccaaatgctccagtacaaccacactctcacaaaacaaatatttaaactgagtcagatataaacttaaagtgctactgactggtgcatctaaaa |
10550092 |
T |
|
| Q |
227 |
acaaagaacctaggtccaatatatagccatggtcctccccttgcttcacca |
277 |
Q |
| |
|
||||||||||||||| || |||||||| | || |||||||||||||||| |
|
|
| T |
10550093 |
acaaagaacctaggttca--atatagccttagttttccccttgcttcacca |
10550141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 362
Target Start/End: Original strand, 45676670 - 45676831
Alignment:
| Q |
203 |
tgctactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---tttt |
299 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |||||||||| | | | | | |||||||||||| | ||||||||||||||||| | |
|
|
| T |
45676670 |
tgctactggctggtgcatctaaaaacaaagaacctaggttcaatatatagtcttagcctttcccttgcttcactaaactaagcgatgtaggacataatca |
45676769 |
T |
|
| Q |
300 |
ccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaa |
362 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
45676770 |
ccaatagctaat-atttttaacctccttctttattcaagaaacttgacaatcaaacccaacaa |
45676831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 10550139 - 10550200
Alignment:
| Q |
300 |
ccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
|||||| ||||| |||||||||||| || |||||| |||||| ||||||||||||||||||| |
|
|
| T |
10550139 |
ccaataactaatgttttttaacctcattctttattcaagaaacttgacaatcaaacccaaca |
10550200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 106 - 359
Target Start/End: Complemental strand, 32342249 - 32341995
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32342249 |
acaacacataaacttctctcactctcacccgaatgccccagtacaaccacactctcacaaaacaaatatttaaactaagtcagatataagcttaaagtgt |
32342150 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaata |
305 |
Q |
| |
|
|||| || |||||||||| ||||||||||| || | |||||||||||| ||||| |||| ||||||||||| ||||| |||||| ||| | ||||||| |
|
|
| T |
32342149 |
tactgaccggtgcatctaaaaacaaagaacttatattcaatatatagccttggtcttccctttgcttcaccaaactaaccgatgtgagacgtctccaata |
32342050 |
T |
|
| Q |
306 |
gctaatcttttttaacctccttatttatt-taagaaatttgacaatcaaacccaa |
359 |
Q |
| |
|
|||| |||||||||||| || |||||| |||||| |||||||||||| |||| |
|
|
| T |
32342049 |
attaatattttttaacctctttctttattcaaagaaacttgacaatcaaatccaa |
32341995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 131 - 410
Target Start/End: Original strand, 14763809 - 14764091
Alignment:
| Q |
131 |
caccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaaacaa |
230 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||| |||||| |
|
|
| T |
14763809 |
cacccccatgccccagtacacccacactctcacaaagcaaatatttaaactaagtcagatacaagcttaaagtgctactgactggtacatctaaaaacaa |
14763908 |
T |
|
| Q |
231 |
agaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttccaatagctaatcttttttaacctcctt |
327 |
Q |
| |
|
|||| |||| | ||||| ||||| ||||| |||||||||||||| | |||||||||||| |||| | |||||| ||||| |||| |||||||||| |
|
|
| T |
14763909 |
agaaactagattcaataaatagctttggtcttccccttgcttcactaaactaagcgatgtgggacataatcaccaataactaatattttctaacctcctt |
14764008 |
T |
|
| Q |
328 |
atttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttcagcattcgcttctattgtttata |
410 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||| | ||| ||| |||||||||||| | | |||||| ||||| |||| |
|
|
| T |
14764009 |
ctttattcaacaaacttgacaatcaaacccaacaatctcaaccttgagtgtaagagtttcatcttccgcttccattgtatata |
14764091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 106 - 361
Target Start/End: Original strand, 14766362 - 14766619
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||||| |||| ||| ||| |||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14766362 |
acaacacatagacttctctcactcacaccc-aatgccccaatacagccacactctcacaatgcaaatatttaaactaagtcagatacaagcttaaagtgc |
14766460 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttcca |
302 |
Q |
| |
|
|| | ||| ||||||||| ||||||| || |||||| |||||||||||| ||||| || ||||||||||| | |||||| ||||| |||| | ||| |
|
|
| T |
14766461 |
tattgactagtgcatctaaaaacaaaaaaactaggttcaatatatagccttggtcttctccttgcttcactaaactaagtgatgttggacataatcacca |
14766560 |
T |
|
| Q |
303 |
atagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||| ||||| |||| |||||||||| |||||| || ||| ||||||||||||||||||| |
|
|
| T |
14766561 |
ataactaatattttctaacctccttgtttattcaacaaacttgacaatcaaacccaaca |
14766619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 117 - 361
Target Start/End: Original strand, 21118396 - 21118639
Alignment:
| Q |
117 |
acttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggt |
216 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| || ||| ||||||| | ||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
21118396 |
acttctttaactctcaccccaatgccccagtacacacacactctcacaaaactaatatttaaactaagtcagatataagcttaaagtgctattgactggt |
21118495 |
T |
|
| Q |
217 |
gcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---ttttccaatagctaatct |
313 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||| ||| | ||| |||||||||| | |||||||||||| |||| | |||||| ||||| | |
|
|
| T |
21118496 |
gcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttcactaaactaagcgatgtgggacataatcaccaataactaatat |
21118595 |
T |
|
| Q |
314 |
tttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
21118596 |
ttttttacctcc----ttatttaagaaaattgacaatcaaacccaaca |
21118639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 21118694 - 21118849
Alignment:
| Q |
133 |
ccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaaacaaag |
232 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
21118694 |
ccccaatgccccagtacacacacactctcacaaaactaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaag |
21118793 |
T |
|
| Q |
233 |
aacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgat |
288 |
Q |
| |
|
|| |||||| |||||||||||| ||| | ||| |||||||||| | |||||||||| |
|
|
| T |
21118794 |
aaactaggttcaatatatagccttggccttcctcttgcttcactaaactaagcgat |
21118849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 20727614 - 20727499
Alignment:
| Q |
135 |
ccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaaacaaagaa |
234 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||| |||||||||| ||||||||||||||| | |||||||||| | | | ||||||||| |||||||||| |
|
|
| T |
20727614 |
ccaataccccagtacaaccacact--cacaaagaaaatatttaatctaagtcagatataagcataaagtgctattgattagtgcatctaaaaacaaagaa |
20727517 |
T |
|
| Q |
235 |
cctaggtccaatatatag |
252 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
20727516 |
cataggttcaatatatag |
20727499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 20726782 - 20726687
Alignment:
| Q |
256 |
tggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatc |
351 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| |||| |||| | | ||||| ||||| ||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
20726782 |
tggtcttcctcttgcttcaccaaactaagcaatgtgggacatcttcaataactaatattttttaacctccttctttattcaagaaacttgacaatc |
20726687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 127 - 361
Target Start/End: Original strand, 38183082 - 38183319
Alignment:
| Q |
127 |
ctctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaa |
226 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
38183082 |
ctctaaccccaatgccccagtacacccacactctcacaaagcaaatatttaacctaagtcagatataagcttaaagtgctactgactggtgcatctaaaa |
38183181 |
T |
|
| Q |
227 |
acaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggact----tttccaatagctaatcttttttaacc |
322 |
Q |
| |
|
|||||||| |||| | |||||||||||| ||||| || ||||||||||| | |||||||||||| ||| | | |||||| ||||| |||| ||||| |
|
|
| T |
38183182 |
acaaagaaactagattcaatatatagccttggtcttcaccttgcttcactaaactaagcgatgt-ggaatatagtcaccaataactaatattttctaacc |
38183280 |
T |
|
| Q |
323 |
tccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
38183281 |
tccttctttattcaagaaacttgacaatcaaacccaaca |
38183319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 109 - 361
Target Start/End: Complemental strand, 3371573 - 3371317
Alignment:
| Q |
109 |
acacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaac----ttaaagtg |
204 |
Q |
| |
|
|||| ||||||||| |||||| |||| ||||| ||||| ||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
3371573 |
acacatagacttctttcactcccacctcaatgtcccaggacaaccacactctcacaaagcaaatatttaaattaagtcagatataaataagtttaaagtt |
3371474 |
T |
|
| Q |
205 |
ctactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaat |
304 |
Q |
| |
|
||| | |||| |||||||| |||||| |||||||||| ||||||||||| ||||| |||| ||||||||||| |||||||||| | ||||| || ||| |
|
|
| T |
3371473 |
ctattgactgatgcatctaaaaacaaggaacctaggtttaatatatagccttggtcttccctttgcttcaccaaactaagcgatatgagacttctctaat |
3371374 |
T |
|
| Q |
305 |
agctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
| ||||| |||||||| ||| || |||||| |||||||||||||||||||| ||||| |
|
|
| T |
3371373 |
aactaatattttttaaactctttttttattcaagaaatttgacaatcaaactcaaca |
3371317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 106 - 361
Target Start/End: Complemental strand, 1026963 - 1026712
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| || |||||| ||||| |||||||||||||||||||||||| ||| ||| |||| |||||||||||| ||| ||||||||| |||| ||| | |
|
|
| T |
1026963 |
acaacacataaacttctgtcacttgcaccccaatgccccagtacaaccacactctcagaaagaaaatatttaaacaaagacagatataagcttatagtac |
1026864 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaata |
305 |
Q |
| |
|
|| | ||||||||||||| |||||||||||||| || | |||||||||| |||| |||||||||||||| | |||||| |||| ||||| ||||||| |
|
|
| T |
1026863 |
tattgactggtgcatctaaaaacaaagaacctacgttcgatatatagccttggtattccccttgcttcactaaactaag-aatgtgagacttctccaata |
1026765 |
T |
|
| Q |
306 |
gctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
||||| |||||| |||||| |||||| |||||| | ||||||||||||||||| |
|
|
| T |
1026764 |
actaatattttttcacctcc---tttattcaagaaactagacaatcaaacccaaca |
1026712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 17731024 - 17731191
Alignment:
| Q |
108 |
aacacgtagacttctctcactctca-ccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgct |
206 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||||||| || ||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17731024 |
aacacatagacttctctcactctcacccccaatg-cccagtacactcacactgtcacaaagaaaatatttaaactaagtcagatataagcttaaagtgct |
17731122 |
T |
|
| Q |
207 |
actaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcac |
275 |
Q |
| |
|
||| ||||||||||||| || |||||| |||||| |||||||||||| ||| | |||||||||||||| |
|
|
| T |
17731123 |
actgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttcac |
17731191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 19032255 - 19032422
Alignment:
| Q |
108 |
aacacgtagacttctctcactctca-ccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgct |
206 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||||||| || ||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19032255 |
aacacatagacttctctcactctcacccccaatg-cccagtacactcacactgtcacaaagaaaatatttaaactaagtcagatataagcttaaagtgct |
19032353 |
T |
|
| Q |
207 |
actaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcac |
275 |
Q |
| |
|
||| ||||||||||||| || |||||| |||||| |||||||||||| ||| | |||||||||||||| |
|
|
| T |
19032354 |
actgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttcac |
19032422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 361
Target Start/End: Complemental strand, 49582767 - 49582517
Alignment:
| Q |
115 |
agacttctctcactctcaccccaatgccccagtacaaccatactttcacaa------agcaaatatttaaactaagtcagatataaacttaaagtgctac |
208 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||| ||| |||||| |||||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
49582767 |
agacttctctcactctcactccaatgctccggtacaaccacactatcacaatcacaaagcaaatatttaaactaagttagatat-aagttaaagtgctac |
49582669 |
T |
|
| Q |
209 |
taactggtgcatctacaaacaaagaacctaggtc-caatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagc |
307 |
Q |
| |
|
| ||| |||||||| ||||||||||| |||||| |||| || | ||||| ||||||||||||| |||||||| ||||| || || | ||||||| |
|
|
| T |
49582668 |
tgactaatgcatctaaaaacaaagaacttaggtctttatatctaacattggtcttccccttgcttcatcacactaaatgatgtgagatttcttcaatagc |
49582569 |
T |
|
| Q |
308 |
taatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
|| | ||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
49582568 |
tattattttttaacctccttctttatttaagaa--ttgacaatcaaactcaaca |
49582517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 183 - 359
Target Start/End: Original strand, 21344714 - 21344890
Alignment:
| Q |
183 |
agtcagatataaacttaaagtgctactaactggtgcatctacaaacaaagaacctaggtccaatat----atagccatggtcctccccttgcttcaccac |
278 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||| ||||||| ||||||||| |||||| ||||| ||||| ||| |||| ||||||| |
|
|
| T |
21344714 |
agtcagatatacacttaaagtgctactgattggtgcatctaaaaacaaataacctaggttcaatatatagatagcattggtcttcctcttgattcaccaa |
21344813 |
T |
|
| Q |
279 |
actaagcgatgtaggacttttccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaa |
359 |
Q |
| |
|
||||||| |||| ||||| || |||||||||| |||||| |||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
21344814 |
actaagcaatgtgagacttctctaatagctaatatttttt-gtctcc---tttatttaagaaacttgacagtcaaacccaa |
21344890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 3372455 - 3372378
Alignment:
| Q |
117 |
acttctctcactctca-ccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatata |
193 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3372455 |
acttctctcactcttatccccaatgccgcagtacaaccacactcacacaaagcaaatatttaaactaagtcagatata |
3372378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 386
Target Start/End: Complemental strand, 3372332 - 3372253
Alignment:
| Q |
307 |
ctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagttt |
386 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||| |||||||||||| ||||||||| ||||| |||| |||||||||| |
|
|
| T |
3372332 |
ctaatattttttaacctccttctttattcaagaaacttgacaatcaaatccaacaatctccaccttgattgtaagagttt |
3372253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 16869908 - 16869982
Alignment:
| Q |
314 |
tttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
||||||||| |||| |||||| |||||| || ||||||||||||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
16869908 |
tttttaacccccttctttattcaagaaacttaacaatcaaacccaacaatctccaccttgattgtaggagtttca |
16869982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 160 - 361
Target Start/End: Original strand, 4660118 - 4660318
Alignment:
| Q |
160 |
tcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggt |
259 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||| | |||||||||| |||||| ||||||||||| |||| |
|
|
| T |
4660118 |
tcacaaaccaaatatttaaactaagtcagatataatcttaaagtgctactgaccggtgcatcaa-aaacaaagaaactaggttcaatatatagcattggt |
4660216 |
T |
|
| Q |
260 |
cctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaa |
359 |
Q |
| |
|
| |||||||||||||||| |||||||||||| || || ||||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4660217 |
cttccccttgcttcaccaaactaagcgatgtgagatttctccaatagctaatatttttcaatctccttctttatttaagaaacttgacaatcaaacccaa |
4660316 |
T |
|
| Q |
360 |
ca |
361 |
Q |
| |
|
|| |
|
|
| T |
4660317 |
ca |
4660318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 362
Target Start/End: Original strand, 31073645 - 31073895
Alignment:
| Q |
114 |
tagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaact |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| || ||||||| |||||||||||||||||| |||||||| ||||| ||||||| ||| |
|
|
| T |
31073645 |
tagacttctctcactctcaccctaatgccccagtataaccacaccctcacaaaacaaatatttaaactaagttagatataagtttaaaatgctactgact |
31073744 |
T |
|
| Q |
214 |
ggtgcatctacaaac--aaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaat |
311 |
Q |
| |
|
| |||| || | | ||||||||||||| ||||||||||| || || |||||| ||||||||| ||||| |||||| ||| || ||||||| ||||| |
|
|
| T |
31073745 |
gttgcagttaaatatttaaagaacctaggttcaatatatagcattgatcttcccctcgcttcaccaaactaaccgatgtgggatttctccaataactaat |
31073844 |
T |
|
| Q |
312 |
cttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaa |
362 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
31073845 |
attttttcacctccttctttattcaagaaacttgacaatcaaacccaacaa |
31073895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 212 - 388
Target Start/End: Original strand, 33301074 - 33301250
Alignment:
| Q |
212 |
ctggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaatagctaat |
311 |
Q |
| |
|
||||| |||||| ||||||||||| | || |||||||||||| ||||| ||||||| ||||||||||||||| ||| | ||||| || |||||||||| |
|
|
| T |
33301074 |
ctggtacatctaaaaacaaagaacatgagttcaatatatagccttggtcttccccttacttcaccacactaagtgatatgtgacttctcaaatagctaat |
33301173 |
T |
|
| Q |
312 |
cttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
33301174 |
atttttcaacctccttatttatttaagaaacttgacattcaaacccaacaatcttcaccttgattgtaagagtttca |
33301250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 118 - 277
Target Start/End: Complemental strand, 20594771 - 20594612
Alignment:
| Q |
118 |
cttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtg |
217 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| |||| |||| || | || |||| |
|
|
| T |
20594771 |
cttctctcattctcaccccaatcctccagtacaaccacactctcacaaaacaaatatttaaactatgtcagatataagcttagagtgttattgaccggtg |
20594672 |
T |
|
| Q |
218 |
catctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcacca |
277 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||| | ||||| |||||||||||||||| |
|
|
| T |
20594671 |
catctaaaaataaagaacctaggttcaatatatagtcttggtcttccccttgcttcacca |
20594612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 106 - 361
Target Start/End: Original strand, 2595259 - 2595512
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||| ||| |||||||| | | | ||||| |||||||||||||||||||| |||||| || |||| | |
|
|
| T |
2595259 |
acaacacatagacttctatcactctcaccttaatgctccaatacaaccacattcttacaaaacaaatatttaaactaagtcacatataagctcaaagcac |
2595358 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggacttttccaata |
305 |
Q |
| |
|
|||| || ||||||||| |||||||||||||| ||| ||||||||| | |||| ||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2595359 |
tactgac--gtgcatctaaaaacaaagaacctaagtctaatatatagtctaggtcttccccttacttcaccacactaagtgatgtaggactcctccaata |
2595456 |
T |
|
| Q |
306 |
gctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2595457 |
gctaatactttttaacctccttctttatataagaaacttgacaatcaaacccaaca |
2595512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 106 - 388
Target Start/End: Complemental strand, 52022293 - 52022006
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccc--ca-gtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaag |
202 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || | ||||||| ||| ||||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
52022293 |
acaacacatagacttctctcactctcatcccaatgcccggcacgcacaaccacactctcacaaaacaaatatttaaactaagtcagatatgagcttaaag |
52022194 |
T |
|
| Q |
203 |
tgctactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac---tttt |
299 |
Q |
| |
|
||||| | ||||||||||||| |||||||||| |||||| |||||||||||| ||||| ||||||| |||||| | ||||||| |||| |||| | |
|
|
| T |
52022193 |
tgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggtcttccccttacttcactaaactaagcaatgtgggacataatca |
52022094 |
T |
|
| Q |
300 |
ccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||| || || |||| |||||| ||||| |
|
|
| T |
52022093 |
ccaataactaat-atttttaacctccttccttattcaagaaacttgacaatcaaacccaacaatctcctccttgattgtaagaatttca |
52022006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 114 - 388
Target Start/End: Complemental strand, 6139973 - 6139697
Alignment:
| Q |
114 |
tagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaact |
213 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||| ||| ||| |||||||||||||||||||||||||| |||||||| ||||||||| || | || |
|
|
| T |
6139973 |
tagacttctctaactctcacct-aatgtcccagtacacccacactctcacaaagcaaatatttaaactaagttagatataagcttaaagtgttattgacc |
6139875 |
T |
|
| Q |
214 |
ggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtaggac-ttttc--caatagctaa |
310 |
Q |
| |
|
|||||||||| |||||||||| ||| || |||||||||||| ||||| |||||||||||||| | |||||||| ||| | || | || ||||| |||| |
|
|
| T |
6139874 |
ggtgcatctaaaaacaaagaaactatgttcaatatatagccttggtcttccccttgcttcactaaactaagcggtgtggaacataatcatcaataactaa |
6139775 |
T |
|
| Q |
311 |
tcttttttaacctccttatttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttca |
388 |
Q |
| |
|
| |||| |||||||||| |||||| || ||| |||||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
6139774 |
ttttttctaacctccttctttattcaaaaaacttgacaatcaaacccaacaatctccaccttgattgtaagagtttca |
6139697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 6138352 - 6138215
Alignment:
| Q |
114 |
tagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaact |
213 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
6138352 |
tagacttctctaactctcaccc-aatgccccaatacacccacactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactgact |
6138254 |
T |
|
| Q |
214 |
ggtgcatctacaaacaaagaacctaggtccaatatatag |
252 |
Q |
| |
|
|||||||| | |||||||||| |||||| |||||||||| |
|
|
| T |
6138253 |
ggtgcatcaaaaaacaaagaaactaggttcaatatatag |
6138215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 292
Target Start/End: Complemental strand, 5397506 - 5397325
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcac-cccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtg |
204 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||| || |||||| ||| ||||||| ||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
5397506 |
acaacacatagacttctctcactctcacgcccaatgtcccggtgcaaccacactctcacaaaataaatatttaaattaagttagatataagcttaaagtg |
5397407 |
T |
|
| Q |
205 |
ctactaactggtgcatctacaaacaaagaacctaggtccaatatatagccatggtcctccccttgcttcaccacactaagcgatgtag |
292 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||||||||| ||||| |||| |||||||||| ||||||||| |||| |
|
|
| T |
5397406 |
ttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccctttgcttcaccgtactaagcgacgtag |
5397325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 43835081 - 43834973
Alignment:
| Q |
146 |
gtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaactggtgcatctacaaacaaagaacctaggtccaa |
245 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||| ||||||||| ||| ||||||||||||| |||| ||||||| |||| |||||| ||||| ||| |
|
|
| T |
43835081 |
gtacaaccacactatcacaaaacaaatatttaaaccaagtcagatgtaagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggttcaa |
43834982 |
T |
|
| Q |
246 |
tatatagcc |
254 |
Q |
| |
|
||||||||| |
|
|
| T |
43834981 |
tatatagcc |
43834973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 43835224 - 43835086
Alignment:
| Q |
106 |
acaacacgtagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgc |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || || ||||| ||| |||||||||| |||||||||| |||||||||| || |||||||| | |
|
|
| T |
43835224 |
acaacacacagacttctctcactctcaccccaatg--acaatataaccacactctcacaaagcagatatttaaaccaagtcagatacaagcttaaagttc |
43835127 |
T |
|
| Q |
206 |
tactaactggtgcatctacaaacaaagaacctaggtccaata |
247 |
Q |
| |
|
|| | | |||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
43835126 |
taatgattggtgcatct-taaacagagaacttaggttcaata |
43835086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 43635711 - 43635811
Alignment:
| Q |
114 |
tagacttctctcactctcaccccaatgccccagtacaaccatactttcacaaagcaaatatttaaactaagtcagatataaacttaaagtgctactaact |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| ||| ||||||| |||||||||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
43635711 |
tagacttctctcactctcacct-aatgccccaatacaaccacactctcacaaatcaaatatttatc--aagtcagatataagtttaaagtgctactaagt |
43635807 |
T |
|
| Q |
214 |
ggtg |
217 |
Q |
| |
|
|||| |
|
|
| T |
43635808 |
ggtg |
43635811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 43834941 - 43834867
Alignment:
| Q |
329 |
tttatttaagaaatttgacaatcaaacccaacaatcgccaccatgatcgtaagagtttcagcattcgcttctatt |
403 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || || |||| |||| ||||||| | | |||||||||| |
|
|
| T |
43834941 |
tttatttaagaaacttgacaatcaaacccaacaatctcccccttgattgtaaaagtttcatcttccgcttctatt |
43834867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 6138179 - 6138118
Alignment:
| Q |
300 |
ccaatagctaatcttttttaacctccttatttatttaagaaatttgacaatcaaacccaaca |
361 |
Q |
| |
|
|||||| ||||| |||| |||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
6138179 |
ccaataactaattttttctaacctccttctttattcaagaaacttgacaatcaaacccaaca |
6138118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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