View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_low_16 (Length: 402)

Name: NF14565_low_16
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_low_16
NF14565_low_16
[»] chr6 (5 HSPs)
chr6 (190-378)||(34848016-34848204)
chr6 (13-141)||(34847839-34847967)
chr6 (334-382)||(29892972-29893020)
chr6 (332-379)||(6708103-6708150)
chr6 (332-379)||(31079621-31079668)
[»] chr2 (2 HSPs)
chr2 (332-379)||(6124182-6124229)
chr2 (334-382)||(43214578-43214626)
[»] chr7 (1 HSPs)
chr7 (333-379)||(27398110-27398156)
[»] chr5 (5 HSPs)
chr5 (334-379)||(9792328-9792373)
chr5 (332-379)||(1639844-1639891)
chr5 (332-382)||(41392774-41392824)
chr5 (350-379)||(11694228-11694257)
chr5 (334-371)||(32624894-32624931)
[»] scaffold0112 (1 HSPs)
scaffold0112 (332-379)||(42127-42174)
[»] chr8 (1 HSPs)
chr8 (332-379)||(28876628-28876675)
[»] chr4 (6 HSPs)
chr4 (332-379)||(5325783-5325830)
chr4 (332-379)||(38492321-38492368)
chr4 (332-379)||(52122931-52122978)
chr4 (333-378)||(3403638-3403683)
chr4 (334-379)||(41145621-41145666)
chr4 (339-379)||(2586345-2586385)
[»] chr3 (2 HSPs)
chr3 (332-379)||(37996873-37996920)
chr3 (332-379)||(47642026-47642073)
[»] chr1 (6 HSPs)
chr1 (332-379)||(3426857-3426904)
chr1 (332-371)||(9528901-9528940)
chr1 (332-379)||(36367754-36367801)
chr1 (332-379)||(38948741-38948788)
chr1 (334-371)||(9092547-9092584)
chr1 (332-380)||(28659362-28659410)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 190 - 378
Target Start/End: Original strand, 34848016 - 34848204
Alignment:
Q  190 aagattaaccattgatgatagagcctctattggttatctttcagatggtctcatagttcgtacacaagaaaggaaaaaaggtacatatattctaatatat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  34848016 aagattaaccattgatgatagagcctctattggttatctttcagatggtctcatagttcgtacacaagaaaggaaaaaaggtacatatattgtaatacat 34848115  T
Q  290 ttgtgaatttttaatttagattcaaattttatcaagacatcaggtgcaagatacacatgggatacagtacgtcatccattttaaagtat 378  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||  |||||||| ||||||||||||||||||||    
T  34848116 ttgtaaatttttaatttagattcaaattttatcaagacatcggatgcaggatacacataagatacagtgcgtcatccattttaaagtat 34848204  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 34847839 - 34847967
Alignment:
Q  13 cataggtcataattcaaggacatgtaattcattaagaggaagtagtagttttgttggagttagactttttggtgttcaacttgatttatcttcttcttgt 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34847839 cataggtcataattcaaggacttgtaattcattaagaggaagtggtagttttgttggagttagactttttggtgttcaacttgatttatcttcttcttgt 34847938  T
Q  113 gtgtccatgaaaaagagttttagcatgga 141  Q
    || ||||||||||||||||||||||||||    
T  34847939 gtttccatgaaaaagagttttagcatgga 34847967  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 29893020 - 29892972
Alignment:
Q  334 tgcaagatacacatgggatacagtacgtcatccattttaaagtatctgg 382  Q
    |||| ||||| || |||||||||||| ||||||||||||||||||||||    
T  29893020 tgcaggatacgcaggggatacagtacatcatccattttaaagtatctgg 29892972  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 6708103 - 6708150
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||    
T  6708103 ggtgcatgatacacaggggatacaatatgtcatccattttaaagtatc 6708150  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 31079668 - 31079621
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||| |||||||||||||||||||||||    
T  31079668 ggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatc 31079621  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 6124229 - 6124182
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||    
T  6124229 ggtgcaggatacacaggggatacaatacgtcatccattttaaagtatc 6124182  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 43214626 - 43214578
Alignment:
Q  334 tgcaagatacacatgggatacagtacgtcatccattttaaagtatctgg 382  Q
    |||| ||||||||||||||||  ||||||||||||||| ||||||||||    
T  43214626 tgcaggatacacatgggatacgatacgtcatccattttgaagtatctgg 43214578  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 27398110 - 27398156
Alignment:
Q  333 gtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||    
T  27398110 gtgcaggatacgcaggggatacagtacgtcatccattttaaagtatc 27398156  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 9792373 - 9792328
Alignment:
Q  334 tgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||| |||||||| ||||||| ||||||||||||||||||||||||    
T  9792373 tgcaggatacacaggggatacggtacgtcatccattttaaagtatc 9792328  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 1639844 - 1639891
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||    
T  1639844 ggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 1639891  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 41392774 - 41392824
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatctgg 382  Q
    |||||| ||||| || ||||||| |||||||||||||||| ||||||||||    
T  41392774 ggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatctgg 41392824  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 379
Target Start/End: Complemental strand, 11694257 - 11694228
Alignment:
Q  350 gatacagtacgtcatccattttaaagtatc 379  Q
    ||||||||||||||||||||||||||||||    
T  11694257 gatacagtacgtcatccattttaaagtatc 11694228  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 32624931 - 32624894
Alignment:
Q  334 tgcaagatacacatgggatacagtacgtcatccatttt 371  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  32624931 tgcaagatacacaggggatacggtacgtcatccatttt 32624894  T

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Target: scaffold0112 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 42127 - 42174
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||    
T  42127 ggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 42174  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 28876628 - 28876675
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||    
T  28876628 ggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 28876675  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 5325783 - 5325830
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||| |||||||||||||||||||||||    
T  5325783 ggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatc 5325830  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 38492321 - 38492368
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||    
T  38492321 ggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 38492368  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 52122931 - 52122978
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||    
T  52122931 ggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 52122978  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 3403638 - 3403683
Alignment:
Q  333 gtgcaagatacacatgggatacagtacgtcatccattttaaagtat 378  Q
    ||||| |||||||| ||||||| |||||||||||||||| ||||||    
T  3403638 gtgcaggatacacaggggatacggtacgtcatccattttgaagtat 3403683  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 41145666 - 41145621
Alignment:
Q  334 tgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||| ||||| || |||||||||||||||||||||||| |||||||    
T  41145666 tgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 41145621  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 2586385 - 2586345
Alignment:
Q  339 gatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    ||||| || ||||||| ||||||||||||||||||||||||    
T  2586385 gatactcaggggatacggtacgtcatccattttaaagtatc 2586345  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 37996873 - 37996920
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || ||||||| ||||||||||||||||||||||||    
T  37996873 ggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatc 37996920  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 47642073 - 47642026
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| |||||||||| |||||||||||||||| |||||||    
T  47642073 ggtgcaggatacgcatgggatacggtacgtcatccattttgaagtatc 47642026  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 3426904 - 3426857
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||| |||||||||||||||||||||||    
T  3426904 ggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatc 3426857  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 9528901 - 9528940
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccatttt 371  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  9528901 ggtgcaagatacacaagggatacaatacgtcatccatttt 9528940  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 36367754 - 36367801
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||    
T  36367754 ggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 36367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 38948788 - 38948741
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatc 379  Q
    |||||| ||||| || ||||||| ||||||||||||||||||||||||    
T  38948788 ggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatc 38948741  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 9092547 - 9092584
Alignment:
Q  334 tgcaagatacacatgggatacagtacgtcatccatttt 371  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  9092547 tgcaggatacacataggatacagtacgtcatccatttt 9092584  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 28659362 - 28659410
Alignment:
Q  332 ggtgcaagatacacatgggatacagtacgtcatccattttaaagtatct 380  Q
    |||||| ||||| || || |||| |||||||||||||||||||||||||    
T  28659362 ggtgcatgatacgcagggaataccgtacgtcatccattttaaagtatct 28659410  T

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