View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_18 (Length: 395)
Name: NF14565_low_18
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 51 - 395
Target Start/End: Original strand, 6656942 - 6657287
Alignment:
| Q |
51 |
atgagattatgcaattatttaaacatttcaatatctatatacctaattttattcgacaaga-gtgtgcttggatgtaatagttaagactaagttttatac |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6656942 |
atgagattatgcaattatttaaacatttcaatatctatatacctaattttattcgacaagaagtgtgcttggatgtaatggttaagactaagttttatac |
6657041 |
T |
|
| Q |
150 |
gactaaagtttataaaatttaagtttagtcgtctggttagactagagtaatgtaagatagcaagaggcgctatgagaagttaagtcgttcctactatgtt |
249 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6657042 |
aactaacgtttataaaatttaagtttagtcgtctggttagactagagtaatgtaagatagcaagaggcgctatgagaagttaagtcgttcctactatgtt |
6657141 |
T |
|
| Q |
250 |
gttgataccgcaaacataaaccagttaaacaaagacaatcatcccaattaatttgacatcattgatctaatccaaaacaaccatccaaacnnnnnnnatt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6657142 |
gttgataccgcaaacataaaccagttaaacaaagacaatcatcccaattaatttgacatcattgatctaatccaaaacaaccatccaaactttttttatt |
6657241 |
T |
|
| Q |
350 |
aaataaaaaaggagaaattacaaaccataggggacgtaaaccaaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6657242 |
aaataaaaaaggagaaattacaaaccatgggggacgtaaaccaaaa |
6657287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University