View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_21 (Length: 372)
Name: NF14565_low_21
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 33377490 - 33377119
Alignment:
| Q |
1 |
caccatccttcccctatcaacatagttttggcattgaagctttggctattattcctattccaatagtaaacaaaactattcgaaaattcccccaaaaccc |
100 |
Q |
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| T |
33377490 |
caccatccttcccctatcaacatagttttggcattgaagctttggctattattcctattccaatagtaaacaaaactattcgaaaattcccccaaaaccc |
33377391 |
T |
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| Q |
101 |
taatcctattcgtcttttttgaagaacactcaattcctttcaaagtcatatgtgatggcaattgattggaacttccactaattataggagtgcaattctt |
200 |
Q |
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| T |
33377390 |
taatcctatccttcttttttgaagaacactcaattcctttcaaagacatatgtgatggcaattgattggaacttccactaattataggagtgcaattctt |
33377291 |
T |
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| Q |
201 |
tgaagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgagagaggatatttacaaaaactgaatgaatcaaagtttaatgataaa |
300 |
Q |
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| T |
33377290 |
tgtagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgaaagaggatatttacaaaaactgaatgaatcaaagtttaatgataaa |
33377191 |
T |
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| Q |
301 |
ccctcctcatcatcttcgctaccaaaagagaactcgttttcaacttctttagaatccaaactataactataa |
372 |
Q |
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| T |
33377190 |
ccctcctcatcatcgtcgctaccaaaagagaactcgttttcaacttctttagaatccaaactataactataa |
33377119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 372
Target Start/End: Complemental strand, 33383468 - 33383269
Alignment:
| Q |
176 |
cactaattataggagtgcaattctttgaagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgagagaggatatttacaaaaact |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| | |||||| || ||||| ||| || ||||||||| |
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| T |
33383468 |
cactaattataggagtgcaattctttgaagaattgcactcgtgagtgtactctaatcggagtcttctaatagctcttgagagtggaaatgaacaaaaact |
33383369 |
T |
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| Q |
276 |
gaatgaatcaaagtttaatgataaaccc---tcctcatcatcttcgctaccaaaagagaactcgttttcaacttctttagaatccaaactataactataa |
372 |
Q |
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||| || |||| ||| |||||| | |||| | | || || |||||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
33383368 |
tgatggatatggatttagtgacaaaccctttttctcagaaacatcactttcaaaagagaattcattttcagcttctttagaatccaaactataactataa |
33383269 |
T |
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