View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_low_23 (Length: 361)

Name: NF14565_low_23
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_low_23
NF14565_low_23
[»] chr6 (9 HSPs)
chr6 (119-310)||(4261638-4261836)
chr6 (1-123)||(4261488-4261610)
chr6 (7-81)||(4037729-4037803)
chr6 (286-347)||(24273707-24273767)
chr6 (83-123)||(4268392-4268432)
chr6 (81-123)||(4276819-4276861)
chr6 (88-121)||(4263019-4263052)
chr6 (1-29)||(4027475-4027503)
chr6 (83-123)||(4037673-4037713)
[»] chr5 (3 HSPs)
chr5 (19-84)||(24101913-24101978)
chr5 (83-123)||(24091661-24091701)
chr5 (13-41)||(24091725-24091753)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 4261638 - 4261836
Alignment:
Q  119 aaagattcttgctactgctgctcatattcacataaacctagagaagaatacatccattgtatacattaattttataacagtcattttgtagttgaagaca 218  Q
    |||||||||||||||||||   |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4261638 aaagattcttgctactgct---catattcacataaacctagagaa---tacatccattgtatacattaattttataacagtcattttgtagttgaagaca 4261731  T
Q  219 tagacacaatcgatcaaacttcgtgatc--------------aattatttgcgtttatttatctgttttccttagagtgctttattttctaatagattaa 304  Q
    ||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4261732 tagacacaatcgatcaaacttcgtgatcaatcatgagtttttaattatttgcgtttatttatctgttttccttagagtgc-ttattttctaatagattaa 4261830  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4261488 - 4261610
Alignment:
Q  1 tggcctaaacctatgggctattagcaggaaatagactgcttaactagctacagttcatgtttggtttatactttgtataaactaaacttgttggcacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  4261488 tggcctaaacctatgggctattagcaggaaatagactgcttaactagctacatttcatgtttggtttacacttggtataaactaaacttgttggcacttt 4261587  T
Q  101 atagatttattctagggaaaaga 123  Q
    |||||||||||||||||||||||    
T  4261588 atagatttattctagggaaaaga 4261610  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 4037803 - 4037729
Alignment:
Q  7 aaacctatgggctattagcaggaaatagactgcttaactagctacagttcatgtttggtttatactttgtataaa 81  Q
    |||||||||||||||| ||||||| ||||||||||||||||| || ||| || ||||| || ||| |||||||||    
T  4037803 aaacctatgggctattggcaggaactagactgcttaactagcaacggttgatatttggattttaccttgtataaa 4037729  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 24273707 - 24273767
Alignment:
Q  286 ttattttctaatagattaaagatatagcaaggtcttagcaatgatctcaaccttggttaatg 347  Q
    ||||||||||||||||| ||||||||  ||||||| |||||||||||| |||||||||||||    
T  24273707 ttattttctaatagattgaagatatat-aaggtctaagcaatgatctccaccttggttaatg 24273767  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 4268392 - 4268432
Alignment:
Q  83 taaacttgttggcactttatagatttattctagggaaaaga 123  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  4268392 taaacttgttggcactttatagatttattttagggaaaaga 4268432  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 4276819 - 4276861
Alignment:
Q  81 actaaacttgttggcactttatagatttattctagggaaaaga 123  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  4276819 actaaacttgttggcactttatacatttattctagggtaaaga 4276861  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 4263019 - 4263052
Alignment:
Q  88 ttgttggcactttatagatttattctagggaaaa 121  Q
    |||||||||||||||||||||| |||||||||||    
T  4263019 ttgttggcactttatagatttactctagggaaaa 4263052  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4027503 - 4027475
Alignment:
Q  1 tggcctaaacctatgggctattagcagga 29  Q
    |||||||||||||||||||||||||||||    
T  4027503 tggcctaaacctatgggctattagcagga 4027475  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 4037713 - 4037673
Alignment:
Q  83 taaacttgttggcactttatagatttattctagggaaaaga 123  Q
    |||||||||||||||||| |||||||| ||| |||||||||    
T  4037713 taaacttgttggcactttgtagatttactcttgggaaaaga 4037673  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 24101978 - 24101913
Alignment:
Q  19 tattagcaggaaatagactgcttaactagctacagttcatgtttggtttatactttgtataaacta 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24101978 tattagcaggaaatagactgcttaactagctacagttcatgtttggattataccttgtataaacta 24101913  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 24091701 - 24091661
Alignment:
Q  83 taaacttgttggcactttatagatttattctagggaaaaga 123  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  24091701 taaacttgttggcactttatatatttattatagggaaaaga 24091661  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 24091753 - 24091725
Alignment:
Q  13 atgggctattagcaggaaatagactgctt 41  Q
    |||||||||||||||||||||||||||||    
T  24091753 atgggctattagcaggaaatagactgctt 24091725  T

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