View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_24 (Length: 358)
Name: NF14565_low_24
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 5242962 - 5243301
Alignment:
| Q |
1 |
aagagcttgaggagaaggcaaagcaaggagagactgttgatcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttatac |
100 |
Q |
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| T |
5242962 |
aagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttatac |
5243061 |
T |
|
| Q |
101 |
attagtttatgattaatgcatattattatatacttaaaatttgatactaatttttgatgtttaattaaaggaaggagcaagggagggcagacaaggaagg |
200 |
Q |
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| T |
5243062 |
attagtttatgattaatgcatattattatatacttaaaatttgatactaatttttggtgtttaattaaaggaaggagcaagggagggcagacaaggaagg |
5243161 |
T |
|
| Q |
201 |
agcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattga |
300 |
Q |
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| T |
5243162 |
agcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattga |
5243261 |
T |
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| Q |
301 |
tattgatgagtccaagttcaagactggtggtggtggtggt |
340 |
Q |
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| T |
5243262 |
tattgatgagtccaagttcaagactggtggtggtggtggt |
5243301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 25523121 - 25522985
Alignment:
| Q |
182 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtg |
281 |
Q |
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| T |
25523121 |
ggagggcagacaaggaaagagcagatggggagagaagggtatcaagaaatgggccgtaaaggaggactcagtactatggataagtctggtgaacaacgtg |
25523022 |
T |
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| Q |
282 |
ctgaagaggaaggtattgatattgatgagtccaagtt |
318 |
Q |
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| T |
25523021 |
ctgctgaggaaggaatagacattgatgaatccaagtt |
25522985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 25523181 - 25523128
Alignment:
| Q |
182 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatggga |
235 |
Q |
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|||||||||||||||||| |||| ||||| ||||||| ||||| ||||||||| |
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| T |
25523181 |
ggagggcagacaaggaagcagcagttagggtcagaaggatatcaagagatggga |
25523128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25523366 - 25523273
Alignment:
| Q |
1 |
aagagcttgaggagaaggcaaagcaaggagagactgttgatcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaagg |
94 |
Q |
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|||| |||||||||| ||||| || || || |||||| |||||||||||| ||||| ||||| ||||| ||||| |||| ||||||||||| |
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| T |
25523366 |
aagaacttgaggagagggcaaggcttggtgaaactgttattcctggtggcacaggtggaaagagtcttgaagctcaacaacaccttgctgaagg |
25523273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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