View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_25 (Length: 351)
Name: NF14565_low_25
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 40567383 - 40567726
Alignment:
| Q |
4 |
gagaagaagagagagatataatgaaaattctgattttcattcctcttattaatcacatttaa------ccgtttcctcttttactatttcgcccctcctt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
40567383 |
gagaagaagagagagatataatgaaaattctgattttcattcctcttattaatcacatttaaatttaaccctttcctcttttactattttgcccctcctt |
40567482 |
T |
|
| Q |
98 |
ttactactaaagcataattgtttcctttcattaatatttcttcaatttactatataaaattttatctcatcctttatttggagtctctaattcacaccat |
197 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
40567483 |
ttactactaaagcataattgttttctttcatcaatatttctccaatttactatataaaattttatctcatcctttatatggagtctctaattcacacaat |
40567582 |
T |
|
| Q |
198 |
tattattaatcagagctggatcgttacaattgtcttggtagtttgaagccaatgttgatttattgactttgaaat---caacgatatataccgatgtgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||||| | || ||| || |
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| T |
40567583 |
tattattaatcagagctggatcgttacaattatcttggtagtatgaacccaatgttgatttattgactttgaaatcaacaacgatataaatcggtgtttt |
40567682 |
T |
|
| Q |
295 |
aatcaaaatggttgtattgctcttatttgatttctgaaatttgt |
338 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| | |||||||| |
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|
| T |
40567683 |
aatcaatatggttgtattgctcttatttaatttttaaaatttgt |
40567726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 38 - 338
Target Start/End: Original strand, 36122005 - 36122308
Alignment:
| Q |
38 |
tttcattcctcttattaatcacatttaaccgtttcctcttttactatttcgcccctccttttactactaaagcataattgtttcctttcattaatatttc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||| |
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|
| T |
36122005 |
tttcattcctcttattaatcacatttaaccctttcctcttttactattttgcccctccttttactactaaaacataattgtttcttttcatcaatatttc |
36122104 |
T |
|
| Q |
138 |
ttcaatttactatataaaattttatctcatcctttatttggagtctctaattcacaccattattattaatcagagctggatcgttacaattgtcttggta |
237 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
36122105 |
tccaatttactatataaaattttatctcatcctttatttggagtctctaattcacaccattattattaatgagagctggattattacaattgtcttggta |
36122204 |
T |
|
| Q |
238 |
gtttgaagccaatgttgatttattgactttgaaat---caacgatatataccgatgtgttaatcaaaatggttgtattgctcttatttgatttctgaaat |
334 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||| | || |||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
36122205 |
gtttgaactcaatgttgatttattgactttgaaatcaacaacgatataaatcggtgtgttaatcaatatggttgtattgctcttatttaatttctgaaat |
36122304 |
T |
|
| Q |
335 |
ttgt |
338 |
Q |
| |
|
|||| |
|
|
| T |
36122305 |
ttgt |
36122308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 36121786 - 36121825
Alignment:
| Q |
7 |
aagaagagagagatataatgaaaattctgattttcattcc |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36121786 |
aagaagagagagatataatgaaaattctgattttcattcc |
36121825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 38811470 - 38811145
Alignment:
| Q |
13 |
agagagatataatgaaaa-ttctgattttcattcctcttattaatcacatttaaccgtttcctcttttactatttcgcccctccttttactactaaagca |
111 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38811470 |
agagagatatgatgaaaaattctgattttcattcctcttattaatcacatttaaccctttcctcttttactattttgcccctccttttactactaaagca |
38811371 |
T |
|
| Q |
112 |
taattgtttcctttcattaatatttcttcaatttactata-----taaaattttatctcatcctttatttggagtctctaattcacaccattattattaa |
206 |
Q |
| |
|
| |||||||| || ||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
38811370 |
ttattgtttc-----atcaatatttctccaatttaatataatatataaaatcttatctcatcctttatttggagtctctaatttacaccattattattaa |
38811276 |
T |
|
| Q |
207 |
tcaga---gctggatcgttacaattgtcttggtagtttgaagccaatgttgatttattgactttgaaat---caacgatatataccgatgtgttaatcaa |
300 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
38811275 |
tcagagctgctggatcattacaattgtcttggtaatttgaagtcaatgttgatttattgactttgaaatcaacaacgatataaacc-----gttaatcaa |
38811181 |
T |
|
| Q |
301 |
aatggttgtattgctcttatttgatttctgaaattt |
336 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||| |
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|
| T |
38811180 |
tatggtaatactgcacttatttgatttctgaaattt |
38811145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 17475658 - 17475856
Alignment:
| Q |
143 |
tttactatataaaattttatctcatcctttatttggagtctctaattcacaccattattattaatcagagctggatcgttacaattgtcttggtagtttg |
242 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||| |
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|
| T |
17475658 |
tttactatataaaatcttatctcatcctttatttggagtctctaattcacaccattattattaatcagagttggatccttacagttgtcttggcagtttg |
17475757 |
T |
|
| Q |
243 |
aagccaatgttgatttattgactttgaa---atcaacgatatataccgatgtgttaatcaaaatggttgtattgctcttatttgatttctgaaatttgt |
338 |
Q |
| |
|
||| ||||||||||||||||| |||||| | |||||||||| || ||| |||||||| |||||||||||||| ||||||||||| |||||||||| |
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|
| T |
17475758 |
aagtcaatgttgatttattgattttgaaaacaacaacgatataaactagtgtattaatcaatatggttgtattgctattatttgatttttgaaatttgt |
17475856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 140 - 338
Target Start/End: Complemental strand, 55875381 - 55875180
Alignment:
| Q |
140 |
caatttactatataaaattttatctcatcctttatttggagtctctaattcacaccattattattaatcagagctggatcgttacaattgtcttggtagt |
239 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55875381 |
caatttactatataaaatcttatatcatcctttatttagagtctctaattcacaccattattattaatcagatctggatcgttacaattgtcttggtagt |
55875282 |
T |
|
| Q |
240 |
ttgaagccaatgttgatttattgactttgaaatc---aacgatatataccgatgtgttaatcaaaatggttgtattgctcttatttgatttctgaaattt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55875281 |
ttgaagccaatgttgatttattgactttgaaatcaataacgatataaaccagtgtgttaatcaatatggttgtattgctcttatttgatttctgaaattt |
55875182 |
T |
|
| Q |
337 |
gt |
338 |
Q |
| |
|
|| |
|
|
| T |
55875181 |
gt |
55875180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 55875462 - 55875388
Alignment:
| Q |
133 |
atttcttcaatttactatataaaattttatctcatcctttatttggagtctctaattcacaccattattattaat |
207 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55875462 |
atttctccaatttactatataaaatcttatcttatcctttatttggagtctctaattcacacaattattattaat |
55875388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 212 - 337
Target Start/End: Complemental strand, 1263123 - 1263000
Alignment:
| Q |
212 |
gctggatcgttacaattgtcttggtagtttgaagccaatgttgatttattgactttgaaat---caacgatatataccgatgtgttaatcaaaatggttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||| ||||||| |
|
|
| T |
1263123 |
gctggatcgttacaattgtcttggtagtttgaagccaatgttgatttattgactttgaaatcaacaaccatataaacc-----gttaatcaatatggttg |
1263029 |
T |
|
| Q |
309 |
tattgctcttatttgatttctgaaatttg |
337 |
Q |
| |
|
|||||| | ||||| |||| ||||||||| |
|
|
| T |
1263028 |
tattgcacctatttcatttatgaaatttg |
1263000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 1263284 - 1263224
Alignment:
| Q |
29 |
aattctgattttcattcctcttatt---aatcacatttaaccgtttcctcttttactattt |
86 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
1263284 |
aattctgattttcattcctcttatttttaatcacatttaacccttttctcttttactattt |
1263224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 1263168 - 1263124
Alignment:
| Q |
148 |
tatataaaattttatctcatcctttatttggagtctctaattcac |
192 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
1263168 |
tatataaaatcttatctcatcctttatttggagtctttaattcac |
1263124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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