View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_low_27 (Length: 342)

Name: NF14565_low_27
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_low_27
NF14565_low_27
[»] chr1 (2 HSPs)
chr1 (13-325)||(9803366-9803678)
chr1 (71-172)||(37738420-37738521)
[»] chr7 (3 HSPs)
chr7 (49-163)||(19814274-19814388)
chr7 (59-172)||(18476614-18476727)
chr7 (71-172)||(3003923-3004024)
[»] chr2 (1 HSPs)
chr2 (71-172)||(23681221-23681322)
[»] chr5 (2 HSPs)
chr5 (70-172)||(36732278-36732380)
chr5 (59-129)||(23885000-23885073)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 9803366 - 9803678
Alignment:
Q  13 gagatgaagaaatgggagatggttcaagggagacaaatgatgaagtagaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803366 gagatgaagaaatgggagatggttcaagggagacaaatgatgaagtagaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaaga 9803465  T
Q  113 aggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctctagatgaatctaattctattttttattcctacctgagagcatca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803466 aggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctctagatgaatctaattctattttttattcctacctgagagcatca 9803565  T
Q  213 tgcttgttaaatccacgctcgttatggaaaaatgttcccttgatcacctgttccccagaagtttgttgttgataaatagcgcaaacaaccttcatacata 312  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9803566 tgcttgttaaatccacgctcgttacggaaaaatgttcccttgatcacctgttccccagaagtttgttgtcgataaatagcgcaaacaaccttcatacata 9803665  T
Q  313 acacaggatcctt 325  Q
    |||||||||||||    
T  9803666 acacaggatcctt 9803678  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 37738420 - 37738521
Alignment:
Q  71 tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta 170  Q
    ||||||||| ||||||||||||||||||||  |||| |||| |||||||||||| ||||| |||||||| || |||||||||||||| || || ||||||    
T  37738420 tgaagaaaaaggaaaatattccaaattcttttcagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagagataaagatttctcta 37738519  T
Q  171 ga 172  Q
    ||    
T  37738520 ga 37738521  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 19814274 - 19814388
Alignment:
Q  49 atgatgaagtagaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatt 148  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| || | ||||||    
T  19814274 atgatgaaggagataactgagatgaagaaaatggaaaatattccaaattcttcacaaaagaagaaggacaaggaagtatatgatcatggaaaacaacatt 19814373  T
Q  149 tctagagatgaatat 163  Q
    | |||| ||||||||    
T  19814374 tttagaaatgaatat 19814388  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 18476727 - 18476614
Alignment:
Q  59 agaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatg 158  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||  ||||||| |||||||||||| ||||| |||||||| || ||||||||| |||||    
T  18476727 agaagattgagatggagaaaatggaaattattccaaattcttcattgaagaagtaggataaggaagaatatgatcatgaaagatgacatttctatagatg 18476628  T
Q  159 aatatctctctaga 172  Q
    ||||| ||||||||    
T  18476627 aatatttctctaga 18476614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 3004024 - 3003923
Alignment:
Q  71 tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta 170  Q
    ||||||||| ||||||||||||||||||||  |||| |||| |||||||||||| ||||| |||||||| || |||||||||||||| || || ||||||    
T  3004024 tgaagaaaaaggaaaatattccaaattcttttcagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagagataaagatttctcta 3003925  T
Q  171 ga 172  Q
    ||    
T  3003924 ga 3003923  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 23681322 - 23681221
Alignment:
Q  71 tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta 170  Q
    ||||||||| ||||||||||||||||||||  |||| |||| |||||||||||| ||||| |||||||| || | |||||||||||| || || ||||||    
T  23681322 tgaagaaaaaggaaaatattccaaattcttgtcagatgaaggaggataaggaagaatatgatcatgaaaaattatatttctagagataaagatttctcta 23681223  T
Q  171 ga 172  Q
    ||    
T  23681222 ga 23681221  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 36732278 - 36732380
Alignment:
Q  70 atgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctct 169  Q
    |||||||||| ||||||||||||||||||||   ||| |||| |||||||||||| ||||| |||||||| || ||||||||||| || || || |||||    
T  36732278 atgaagaaaaaggaaaatattccaaattcttttaagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagatataaagatttctct 36732377  T
Q  170 aga 172  Q
    |||    
T  36732378 aga 36732380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 23885000 - 23885073
Alignment:
Q  59 agaagactgagatgaagaaaatggaaaatattccaa---attcttcacagaagaagaaggataaggaagtatat 129  Q
    ||||||||||  ||||||||||||||||||||||||   ||||||| |||| ||||||||||||||||| ||||    
T  23885000 agaagactgaagtgaagaaaatggaaaatattccaaattattcttctcagatgaagaaggataaggaagaatat 23885073  T

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