View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_28 (Length: 335)
Name: NF14565_low_28
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 3598967 - 3599289
Alignment:
| Q |
1 |
agcactcaaaccaacttttagaaaattattatgtttgattaatgattaaaaaccagaaaatggattcattataaaactagtatcacttcaaatttaggca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598967 |
agcactcaaaccaacttttagaaaattattatgtttgattaatgattaaaaaccataaaatggattcattataaaactagtatcacttcaaatttaggca |
3599066 |
T |
|
| Q |
101 |
ttttttaattgttcaccctgaagtgttacggttcataaatttattgannnnnnnnaataatgaactaccaaacttatgaactcgatgtgctcatatattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3599067 |
ttttttaattgttcaccctgaagtgttacggttcataaatttattgattttttttaataatgaactaccaaacttatgaattcgatgtgctcatatattc |
3599166 |
T |
|
| Q |
201 |
catgtttcccttctgaatttatcagacgctgtcagcttctgatctacgtgatccttccatttctgctcttatagcggccaaaatgaaggagttccatgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599167 |
aatgtttcccttctgaatttatcagacgctgtcagcttctgatctacgtgatccttccatttctgctcttatagcggccaaaatgaaggagttccatgat |
3599266 |
T |
|
| Q |
301 |
ctagatatgcctggtgaaaagaa |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3599267 |
ctagatatgcctggtgaaaagaa |
3599289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 15546411 - 15546346
Alignment:
| Q |
250 |
gatccttccatttctgctcttatagcggccaaaatgaaggagttccatgatctagatatgcctggt |
315 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15546411 |
gatccatctatttctgctcttatagcctccaaaatgaaggagttccatgatcttgacatgcctggt |
15546346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University