View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_29 (Length: 332)
Name: NF14565_low_29
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_29 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 43735153 - 43734850
Alignment:
| Q |
1 |
cgttgttttggtgatacattccaaatgaatccttaggtggaagtgagagatttctgttcttataggaaacaactattacttgagcaaagccactaagcat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43735153 |
cgttgttttggtgatacattccaactgaatccttaggtggaagtgagagatttctgttcttataggaaacaactattacttgagcaaagccactaagcat |
43735054 |
T |
|
| Q |
101 |
gctgctatgtggtttgttcttgacataacgcgacgaaacaaggaagaacaacaaagttgacaagaacataacggcagctggaacaccaaaacctagtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43735053 |
gctgctatgtggtttgttcttgacataacgcgacgaaacaaggaagaacaacaaagttgacaagaacataacggcagctggaacaccaaaacctagtttc |
43734954 |
T |
|
| Q |
201 |
caaccaagatgatcttggatatagattatcgctgtcatggaaaaaactacagcaatagcttgagaagctatgtaccaacttatgaagctttccaacaccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43734953 |
caaccaagatgatcttggatatagattatcgctgtcatggaaaaaactacagcaatagcttgagaagctatgtaccaacttatgaagctttccaacaccc |
43734854 |
T |
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| Q |
301 |
tttg |
304 |
Q |
| |
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|||| |
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| T |
43734853 |
tttg |
43734850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 43702781 - 43702735
Alignment:
| Q |
177 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
43702781 |
gctggaacaccaaaaccaactttccaaccaagatgatcttggatata |
43702735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 43686281 - 43686235
Alignment:
| Q |
177 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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||||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
43686281 |
gctggaacaccaaaaccaattctccaaccaagatgatcttggatata |
43686235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 43713605 - 43713559
Alignment:
| Q |
177 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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||||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
43713605 |
gctggaacaccaaaaccaattctccaaccaagatgatcttggatata |
43713559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 43727507 - 43727461
Alignment:
| Q |
177 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
43727507 |
gctggaacaccaaaaccaattttccaaccaagatgctcttggatata |
43727461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 2689905 - 2689835
Alignment:
| Q |
153 |
aaagttgacaagaacataacggcagctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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||||| || |||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
2689905 |
aaagtggaaaagaacataagtgctgctggaacaccaaaaccaagtttccatccaagatgatcttggatata |
2689835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 24415 - 24461
Alignment:
| Q |
177 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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|||||||| |||||||| | ||||||||||||||||||||||||||| |
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| T |
24415 |
gctggaactccaaaaccaattttccaaccaagatgatcttggatata |
24461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 25273307 - 25273261
Alignment:
| Q |
177 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
223 |
Q |
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|||||||| |||||||| | ||||||||||||||||||||||||||| |
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| T |
25273307 |
gctggaactccaaaaccaattttccaaccaagatgatcttggatata |
25273261 |
T |
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