View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_3 (Length: 669)
Name: NF14565_low_3
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 186 - 653
Target Start/End: Complemental strand, 27422930 - 27422464
Alignment:
| Q |
186 |
accccctacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
285 |
Q |
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| T |
27422930 |
accccgtacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
27422831 |
T |
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| Q |
286 |
agacttcaacaagccaaaataggtaaggaattccctttacgcgcctgaatcgccaacatgattaaataa-ataatataggagcgtcaattttgaagggca |
384 |
Q |
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| T |
27422830 |
agacttcaacaagccaaaataggtaaggaattccctttacgcgcctgaatcgccaacatgattaaataacataatataggagcgtcaattttgaagggca |
27422731 |
T |
|
| Q |
385 |
acaaacgcaacactatataggggaattcagcataaccaacacaccagcaaaagaattcaatatgctctttattttaaagactcgatatactcatctagtt |
484 |
Q |
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| T |
27422730 |
acaaacgcaacactatataggggaaatcagcataaccaacacaccagc--aagaattcaatatgctctttattttaaagactcgatatactcatctagtt |
27422633 |
T |
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| Q |
485 |
ttattgcataacataacacaatgttgtattttgataaagnnnnnnnggaagaatgaaattcaatacgttctttgcttaagaacttaaaatttcctcaagc |
584 |
Q |
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| T |
27422632 |
ttattgcataacacaacacaatgttatattttgataaagaaaaaaaggaagaatgaaattcaatacgttctttgcttaagaacttaaaatttcctcaagc |
27422533 |
T |
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| Q |
585 |
aaaatatttagcatgaatggtaggagacaaccattagatccaatttaagactcacagaaaccataaaat |
653 |
Q |
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| T |
27422532 |
aaaatatttagcctgaatggtaggagacaaccaatatatccaattcaagactcacaaaaaccataaaat |
27422464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 27423146 - 27423075
Alignment:
| Q |
95 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
166 |
Q |
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| T |
27423146 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
27423075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 27423199 - 27423147
Alignment:
| Q |
13 |
ataatactgataataggaagcaaaagaatgcttgcagctcgcgaatgtgtgta |
65 |
Q |
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| T |
27423199 |
ataatactgataatgggaagcaaaagaatgcttgcagctcgcgaatgtgtgta |
27423147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 19683587 - 19683642
Alignment:
| Q |
263 |
tccacctgttaataagcggctaaagacttcaacaagccaaaataggtaaggaattcc |
319 |
Q |
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| T |
19683587 |
tccacctgttaataagcagctaaagacttcaa-aagccaaaataattaaggagttcc |
19683642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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