View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_30 (Length: 330)
Name: NF14565_low_30
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 65 - 317
Target Start/End: Original strand, 33612748 - 33612996
Alignment:
| Q |
65 |
agtcattgatatatacaaaaagtgtatgcttgttaaaattataagtgatgtatggaaaagaaaatacgatttagttaactcattaccaactgagttaaat |
164 |
Q |
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| T |
33612748 |
agtcattgatatatacaaaaagtgtatgcttgttaaaattataagtgatgtatggaaaagaaaatacgatttagttaactccttaccaactgagttaact |
33612847 |
T |
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| Q |
165 |
ttcattgaagaagatgtatgcaatattaattggataatataattgaaagtaatattttttgtttgttgcaaatttatatgaattattataatggaannnn |
264 |
Q |
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| T |
33612848 |
ttcatcgaagaagacgtttgcaatattaattcgatagtataactgaaagttatattttttgtttcttgcaa----atatgaattactataatggaatttt |
33612943 |
T |
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| Q |
265 |
nnnngatgagatttattatcataacgggatgaactattttcttatagtattat |
317 |
Q |
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| T |
33612944 |
ttttgtcgagatttattattagtacgggatgaattattatcttatagtattat |
33612996 |
T |
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Back To:
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 35387856 - 35387906
Alignment:
| Q |
28 |
agcttgttgtccgattgtcttctatttgtgtgcaattagtcattgatatat |
78 |
Q |
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| T |
35387856 |
agcttgttgtccacttgtcttctattcatgtgtaattagtcattgatatat |
35387906 |
T |
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