View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_37 (Length: 296)
Name: NF14565_low_37
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 9579838 - 9580117
Alignment:
| Q |
3 |
gtagaaaatgtatattaaaatatgatgattgttctgcgaggtttatgtatgatgaatgttcagctaacacactatagtgtgctaaaggtttagttaacag |
102 |
Q |
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| T |
9579838 |
gtagaaaatgtatattaaaatatgatgattgttctgtgaggtttatgtatgatgaatgttcagctaacacactatagtgtgttaaaggtttagttaacag |
9579937 |
T |
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| Q |
103 |
aacagttagtgtccaaattcatatacttgccgaatatcgcaacatctaaaagatgttttcataatctattctggagagcttaggaaaataactagcttat |
202 |
Q |
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| T |
9579938 |
aacagttagtgtccaaattcatatacttgatgaatatcgcaacatctaaaagatgttttcataatctattctggagagcttaggaaaataactagcttat |
9580037 |
T |
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| Q |
203 |
agccatgtcataagttgtttccatagcctctca--gagttaagtaagtgcttatgttaatatataaaatcaaataataag |
280 |
Q |
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| T |
9580038 |
agccgtgtcataagttgtttccatagcctctcacagagtcttataagtgcttatgttaatatataaaatcaaataataag |
9580117 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 43709280 - 43709347
Alignment:
| Q |
156 |
tgttttcataatctattctggagagcttaggaaaataactagcttatagccatgtcataagttgtttccata |
227 |
Q |
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| T |
43709280 |
tgttttcatgagctatcctggagagcttatgaaaata----gcttatagacatgtcataagttatttccata |
43709347 |
T |
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