View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_39 (Length: 285)
Name: NF14565_low_39
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 12055414 - 12055555
Alignment:
| Q |
18 |
gtagtgtaatgcaatatgtcctgataccaggtttatgtgggtgagtagtagtaacacattacccctttttccctgcatcagtccaaaggcagaacagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12055414 |
gtagtgtaatgcaatatgtcctgataccaggtttctgtgggtgagtagtagtaacacattacccctttttccctgcatcagtccaaaggcagaacagaaa |
12055513 |
T |
|
| Q |
118 |
aaatgggatcttatggattctggccagtaatgtgatcaatcc |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12055514 |
aaatgggatcttatggattctggccagtaatgtgatcaatcc |
12055555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 12055611 - 12055664
Alignment:
| Q |
215 |
ttagatacttgaatatgaatatagttaggaactatttaaatgaatgaatgtcgt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12055611 |
ttagatacttgaatatgaatatagttaggaactatttaaatgaatgaatgtcgt |
12055664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 12075277 - 12075329
Alignment:
| Q |
215 |
ttagatacttgaatatgaatatagttaggaacta-tttaaatgaatgaatgtc |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
12075277 |
ttagatacttgaatatgaatatggttaggaacaattttaaatgaatggatgtc |
12075329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 12043978 - 12044056
Alignment:
| Q |
65 |
gtagtaacacattacccctttttccctgcatcagtccaaaggcagaacagaaaaaatgggatcttatggattctggccagtaatg |
149 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| |||||||| |||||||||||||||||| || | ||| |||||||||| |
|
|
| T |
12043978 |
gtagtaacacattatccatttt-ccctgcatcaatccaaagg-----cagaaaaaatgggatcttttgaactctagccagtaatg |
12044056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University