View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_4 (Length: 643)
Name: NF14565_low_4
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 125 - 629
Target Start/End: Original strand, 56281283 - 56281786
Alignment:
| Q |
125 |
aatcaagggcttggctccgcctttaaataannnnnnnnnnnnncatataccatacttgaattatccccttctttattttcttgctcaagattcaaagcgt |
224 |
Q |
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| T |
56281283 |
aatcaagggcttggctccgcctttaaataatttttctttttttcatataccatacttgaattatccccttctttattttcttgctcaagattcaaagcgt |
56281382 |
T |
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| Q |
225 |
ttgataccatgagaaattgaaagagacaccaaagactttcagcttcattgtattgcaatgctaatattggcatttggctcaaatgattcatttcgttcta |
324 |
Q |
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| T |
56281383 |
ttgataccatgagaaattgaaagagacaccaaagactttcagcttcattgtattgcaatgctaatattggcatttggctcaaatgattcatttcgttcta |
56281482 |
T |
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| Q |
325 |
tttattacctataatctatgatagtaagcaaataatatatcacattaatttgagagtgcttggttacactgatcctttctgactcctgcaactttacaaa |
424 |
Q |
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| T |
56281483 |
tttattacctataatctatgatagtaagcaaataatatatcacattaatttgagagtgcttggttacactgatcctttctgactcctgcaactttacaaa |
56281582 |
T |
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| Q |
425 |
gtggtcaattttcagcttcatttggacatgcttgggctaattttctaaggttttcaatgatcataaccagttttgtgttaaatcgattgacaaagcactt |
524 |
Q |
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| T |
56281583 |
gtggtaaattttcagcttcatttggacatgcttgggctaattttctaaggttttcaatgatcataacgagttttgtgttaaatcgattgacaaagcactt |
56281682 |
T |
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| Q |
525 |
gggcaaccaccctgcaggatctaactgaataaaacaaagcgatgaggaaaactt----attagtcaagattttattgttgcagaaattaaatagtatgga |
620 |
Q |
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| T |
56281683 |
gggcaaccaccctgcaggatctaactgaataaaacaaagcgatgaggaaaacttattaattagtcaagattttattgttgcag-----aaatagtatgga |
56281777 |
T |
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| Q |
621 |
tattaactt |
629 |
Q |
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||||||||| |
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| T |
56281778 |
tattaactt |
56281786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 56281149 - 56281242
Alignment:
| Q |
34 |
atatgctaattttttaggacatgacatgccaaatgaaagtgtgagcattggaggaatttcttggtgttgtagtgtattggtttgtcattttaat |
127 |
Q |
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| T |
56281149 |
atatgctaattttttaggacatgacatgccaaatgaaagtgtgagcattggaggaatttcttggtgttgtagtgtattggtttgtcattttaat |
56281242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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